Non-Coding RNA Search

Ss1.1-rspc003_g12.5

Sequence:


               
               TTTTTAGGCCCCCACTTGAGAGCAAAAGATGATCCCTGGTGAATATTTTATACTGTATCT
TTTACTTTAGCCACTAAATATGTTATTGCTTGATGCAGACATTTCACAGAGGCCTATGGA
TTACAGCACTGGATTGAGCCGTCTATACCCATGCCCGAAAGAGGTGCAGTTTCTCCAAAG
GATAAAGTTCTCTTCTCAGAACTTGTCTTTCCCAAAAGATATTTGAGTGTGAGGGCAGCT
GACCCTTGGCCTAGGAAGGTCTGAATATTCTCTGGATTTTCCCTTTTTCTTGTTGCTGCT
GAATGACAGTTCCTGTCGCTACTTAGATTTTGATCTTTCTCAAAGGTGTTGATTTACACA
AAGGCCAGCTAATTGCTGAAATCCTGGCCCCTGAAAGCAAAATGAAATTCAAACTGAGAG
CCCTGCCGAGGCCAGGGTTCTTAAATCTTGGCCATTTGCTACATTTTTCTTAAAAGCTTC
AGTGCTTTTCCCTAGAGCCATAAAAAGGCAATGAACTGTTTCAGGACTATTTTATAAGTA
TCCCAGATCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAGGCCCCCACTTGAGAGCAAAAGATGATCCCTGGTGAATATTTTATACTGTATCT
TTTACTTTAGCCACTAAATATGTTATTGCTTGATGCAGACATTTCACAGAGGCCTATGGA
TTACAGCACTGGATTGAGCCGTCTATACCCATGCCCGAAAGAGGTGCAGTTTCTCCAAAG
GATAAAGTTCTCTTCTCAGAACTTGTCTTTCCCAAAAGATATTTGAGTGTGAGGGCAGCT
GACCCTTGGCCTAGGAAGGTCTGAATATTCTCTGGATTTTCCCTTTTTCTTGTTGCTGCT
GAATGACAGTTCCTGTCGCTACTTAGATTTTGATCTTTCTCAAAGGTGTTGATTTACACA
AAGGCCAGCTAATTGCTGAAATCCTGGCCCCTGAAAGCAAAATGAAATTCAAACTGAGAG
CCCTGCCGAGGCCAGGGTTCTTAAATCTTGGCCATTTGCTACATTTTTCTTAAAAGCTTC
AGTGCTTTTCCCTAGAGCCATAAAAAGGCAATGAACTGTTTCAGGACTATTTTATAAGTA
TCCCAGATCCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-462, - strand, RNAz p=0.646671

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-462, - strand, RNAz p=0.646671

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               5-552, gnl|bosTau2|chr8 (43076382-43076944)
               

               
               5-552, gnl|canFam2|chr1 (77701671-77700943)
               

               
               5-552, gnl|dasNov1|scaffold_761 (110996-110284)
               

               
               5-552, gnl|echTel1|scaffold_198580 (4533-3896)
               

               
               5-552, gnl|galGal2|chrZ_random (13017329-13018051)
               

               
               5-552, gnl|hg17|chr9 (84656659-84657357)
               

               
               5-552, gnl|Hg17|chr9 (84656670-84657228)
               

               
               5-552, gnl|loxAfr1|scaffold_11718 (22527-21849)
               

               
               5-552, gnl|mm7|chr13 (58028404-58029071)
               

               
               5-552, gnl|Mm7|chr13 (58028415-58028939)
               

               
               5-552, gnl|monDom2|scaffold_17 (49818145-49817361)
               

               
               5-552, gnl|oryCun1|scaffold_214357 (14015-14683)
               

               
               5-552, gnl|panTro1|chr11 (68717805-68718504)
               

               
               5-552, gnl|rheMac2|chr15 (93546796-93547507)
               

               
               5-552, gnl|rn3|chr17 (11679993-11679314)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-552, gnl|bosTau2|chr8 (43076382-43076944)
               

               
               5-552, gnl|canFam2|chr1 (77701671-77700943)
               

               
               5-552, gnl|dasNov1|scaffold_761 (110996-110284)
               

               
               5-552, gnl|echTel1|scaffold_198580 (4533-3896)
               

               
               5-552, gnl|galGal2|chrZ_random (13017329-13018051)
               

               
               5-552, gnl|hg17|chr9 (84656659-84657357)
               

               
               5-552, gnl|Hg17|chr9 (84656670-84657228)
               

               
               5-552, gnl|loxAfr1|scaffold_11718 (22527-21849)
               

               
               5-552, gnl|mm7|chr13 (58028404-58029071)
               

               
               5-552, gnl|Mm7|chr13 (58028415-58028939)
               

               
               5-552, gnl|monDom2|scaffold_17 (49818145-49817361)
               

               
               5-552, gnl|oryCun1|scaffold_214357 (14015-14683)
               

               
               5-552, gnl|panTro1|chr11 (68717805-68718504)
               

               
               5-552, gnl|rheMac2|chr15 (93546796-93547507)
               

               
               5-552, gnl|rn3|chr17 (11679993-11679314)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fce (0.543183)
               

               
               spc (0.226732)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               spc (0.226732)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	5-552, gnl\|bosTau2\|chr8 (43076382-43076944)
	5-552, gnl\|canFam2\|chr1 (77701671-77700943)
	5-552, gnl\|dasNov1\|scaffold_761 (110996-110284)
	5-552, gnl\|echTel1\|scaffold_198580 (4533-3896)
	5-552, gnl\|galGal2\|chrZ_random (13017329-13018051)
	5-552, gnl\|hg17\|chr9 (84656659-84657357)
	5-552, gnl\|Hg17\|chr9 (84656670-84657228)
	5-552, gnl\|loxAfr1\|scaffold_11718 (22527-21849)
	5-552, gnl\|mm7\|chr13 (58028404-58029071)
	5-552, gnl\|Mm7\|chr13 (58028415-58028939)
	5-552, gnl\|monDom2\|scaffold_17 (49818145-49817361)
	5-552, gnl\|oryCun1\|scaffold_214357 (14015-14683)
	5-552, gnl\|panTro1\|chr11 (68717805-68718504)
	5-552, gnl\|rheMac2\|chr15 (93546796-93547507)
	5-552, gnl\|rn3\|chr17 (11679993-11679314)