Non-Coding RNA Search

Ss1.1-rspc003_g5.5

Sequence:


               
               CTTCGTGCTGTGGATCGCCTCAACGAGCAGTCCTCGGAAGCTAATCTCTACCGCCTCCTG
GAGCTGGACCAGCCGCCCAAGGCCGACGAGGACCCGGGCACCCCGAAACCTGTGAGCTTC
ACGGTGAAGGAGACTGTGTGTCCCAGGCCGACCCGGCAGCCCCCGGAGCTGTGTGACTTC
AAGGAGAATGGGCGAGTGAAGCAGTGTGTGGGGACAGTCACCTTGAACCCATCCATTCAC
TCACTGGACATCTCCTGTAATGAGATTCAGAGTGTCAGGAGACGTCCCCGACCCCCATAT
TTGCCAAGGCCAAGGCCACCTCCGTTTTTCCCACCAAGGCTCCCACCAAGGATCCCACCA
GGGTTCCCACCAAGGTTCCCACCACGGTTCCCCGGAAAACGGTGATGGAGTGGCTGATAA
CATACCCATTAAAAGCTTTTGGTGAATCCTGAGCCCAGGGAAAGTCCTAGGATCTTATTG
TTGTGGCTCAGACTTCTGAACCATGAAAAATAAATTCTTGTGAAAGCAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGTGCTGTGGATCGCCTCAACGAGCAGTCCTCGGAAGCTAATCTCTACCGCCTCCTG
GAGCTGGACCAGCCGCCCAAGGCCGACGAGGACCCGGGCACCCCGAAACCTGTGAGCTTC
ACGGTGAAGGAGACTGTGTGTCCCAGGCCGACCCGGCAGCCCCCGGAGCTGTGTGACTTC
AAGGAGAATGGGCGAGTGAAGCAGTGTGTGGGGACAGTCACCTTGAACCCATCCATTCAC
TCACTGGACATCTCCTGTAATGAGATTCAGAGTGTCAGGAGACGTCCCCGACCCCCATAT
TTGCCAAGGCCAAGGCCACCTCCGTTTTTCCCACCAAGGCTCCCACCAAGGATCCCACCA
GGGTTCCCACCAAGGTTCCCACCACGGTTCCCCGGAAAACGGTGATGGAGTGGCTGATAA
CATACCCATTAAAAGCTTTTGGTGAATCCTGAGCCCAGGGAAAGTCCTAGGATCTTATTG
TTGTGGCTCAGACTTCTGAACCATGAAAAATAAATTCTTGTGAAAGCAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|68774|pir||XKPGC

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|68774|pir||XKPGC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               85-192, gnl|bosTau2|chr22 (40888520-40888627)
               

               
               85-192, gnl|canFam2|chr20 (43791405-43790863)
               

               
               85-192, gnl|dasNov1|scaffold_158081 (1601-1035)
               

               
               85-192, gnl|echTel1|scaffold_215749 (5143-5652)
               

               
               85-192, gnl|hg17|chr3 (48240483-48241051)
               

               
               85-192, gnl|Hg17|chr3 (48240848-48240955)
               

               
               85-192, gnl|loxAfr1|scaffold_47243 (11709-11121)
               

               
               85-192, gnl|mm7|chr9 (109545675-109545140)
               

               
               85-192, gnl|Mm7|chr9 (109545337-109545230)
               

               
               85-192, gnl|oryCun1|scaffold_100091 (1281-807)
               

               
               85-192, gnl|panTro1|chr2 (49719872-49720436)
               

               
               85-192, gnl|rheMac2|chr2 (88271981-88271413)
               

               
               85-192, gnl|rn3|chr8 (114235807-114235269)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-192, gnl|bosTau2|chr22 (40888520-40888627)
               

               
               85-192, gnl|canFam2|chr20 (43791405-43790863)
               

               
               85-192, gnl|dasNov1|scaffold_158081 (1601-1035)
               

               
               85-192, gnl|echTel1|scaffold_215749 (5143-5652)
               

               
               85-192, gnl|hg17|chr3 (48240483-48241051)
               

               
               85-192, gnl|Hg17|chr3 (48240848-48240955)
               

               
               85-192, gnl|loxAfr1|scaffold_47243 (11709-11121)
               

               
               85-192, gnl|mm7|chr9 (109545675-109545140)
               

               
               85-192, gnl|Mm7|chr9 (109545337-109545230)
               

               
               85-192, gnl|oryCun1|scaffold_100091 (1281-807)
               

               
               85-192, gnl|panTro1|chr2 (49719872-49720436)
               

               
               85-192, gnl|rheMac2|chr2 (88271981-88271413)
               

               
               85-192, gnl|rn3|chr8 (114235807-114235269)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nbm (0.794597)
               

               
               fli (0.202881)
               

               
               nca (0.136874)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.794597)
               

               
               fli (0.202881)
               

               
               nca (0.136874)
               

               
               spc (0.113366)

	85-192, gnl\|bosTau2\|chr22 (40888520-40888627)
	85-192, gnl\|canFam2\|chr20 (43791405-43790863)
	85-192, gnl\|dasNov1\|scaffold_158081 (1601-1035)
	85-192, gnl\|echTel1\|scaffold_215749 (5143-5652)
	85-192, gnl\|hg17\|chr3 (48240483-48241051)
	85-192, gnl\|Hg17\|chr3 (48240848-48240955)
	85-192, gnl\|loxAfr1\|scaffold_47243 (11709-11121)
	85-192, gnl\|mm7\|chr9 (109545675-109545140)
	85-192, gnl\|Mm7\|chr9 (109545337-109545230)
	85-192, gnl\|oryCun1\|scaffold_100091 (1281-807)
	85-192, gnl\|panTro1\|chr2 (49719872-49720436)
	85-192, gnl\|rheMac2\|chr2 (88271981-88271413)
	85-192, gnl\|rn3\|chr8 (114235807-114235269)