Non-Coding RNA Search

Ss1.1-rspc003_i17.5

Sequence:


               
               GTTACTGATCCATTGTTGCTGTGAGCTATGGTGTAGGTCACAGACATGGCTTACATGTTG
CTGGTGTTGCTGGGACTGTGGTATAGGCCGGCAGCTACAGCTCCGATTTGATCCCTAGCC
TGGGGATTTCCATATGCTGCGGGTACAGCCCTAAAAAGCTTAAAAAAAAAAAAGGCTAAA
ATGAAATAAAAGTATTGCCAATCTTGCCCATTTACAGGACAGATTTTTCAACCTCTGAGT
TTAGGGGTGATGGAGAGTCTCAAGGTGCCCCTTCCTCCCAAAGCCACTCAGGTGAACTCG
TCTGCATGCCTTGTGGTCTGGATTGTAGTACAGACATTGGCAAACTTTCTGAAAATGGGG
CCAGCCATTTGTATTTGAAAAGTCAGCGAGGCATTTCCTTTTCATGTCAGCCATTTTATT
ATCTCCTTCTTAACCAAATTTGAGTTTGTGAAGTATTTGACAGACCTCCTGATGTTTTCC
TGCATTGATGATGAAAGACATGTGCTGGTTGTGTATAAAGCCAAAGGCATGCTATTAAAA
AAAAAAAAAAAAAAAAAATGTAAATTCTACTTGGGGAGTTTGTTTTTGCCTCCATTCCCT
TGATTTTCATTATTATGCAGAGGAAGGCACTTCCAGCCCCTTTAGTACTTTTACTAAAAA
AAAGTCCTCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACTGATCCATTGTTGCTGTGAGCTATGGTGTAGGTCACAGACATGGCTTACATGTTG
CTGGTGTTGCTGGGACTGTGGTATAGGCCGGCAGCTACAGCTCCGATTTGATCCCTAGCC
TGGGGATTTCCATATGCTGCGGGTACAGCCCTAAAAAGCTTAAAAAAAAAAAAGGCTAAA
ATGAAATAAAAGTATTGCCAATCTTGCCCATTTACAGGACAGATTTTTCAACCTCTGAGT
TTAGGGGTGATGGAGAGTCTCAAGGTGCCCCTTCCTCCCAAAGCCACTCAGGTGAACTCG
TCTGCATGCCTTGTGGTCTGGATTGTAGTACAGACATTGGCAAACTTTCTGAAAATGGGG
CCAGCCATTTGTATTTGAAAAGTCAGCGAGGCATTTCCTTTTCATGTCAGCCATTTTATT
ATCTCCTTCTTAACCAAATTTGAGTTTGTGAAGTATTTGACAGACCTCCTGATGTTTTCC
TGCATTGATGATGAAAGACATGTGCTGGTTGTGTATAAAGCCAAAGGCATGCTATTAAAA
AAAAAAAAAAAAAAAAAATGTAAATTCTACTTGGGGAGTTTGTTTTTGCCTCCATTCCCT
TGATTTTCATTATTATGCAGAGGAAGGCACTTCCAGCCCCTTTAGTACTTTTACTAAAAA
AAAGTCCTCGAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               373-544, gnl|bosTau2|chr7 (5882027-5881858)
               

               
               373-544, gnl|canFam2|chr20 (48914795-48914509)
               

               
               373-544, gnl|hg17|chr19 (16612156-16612468)
               

               
               373-544, gnl|Hg17|chr19 (16612342-16612150)
               

               
               373-544, gnl|loxAfr1|scaffold_8936 (37894-38248)
               

               
               373-544, gnl|panTro1|chr20 (17297897-17298212)
               

               
               373-544, gnl|rheMac2|chr19 (16187589-16187894)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               373-544, gnl|bosTau2|chr7 (5882027-5881858)
               

               
               373-544, gnl|canFam2|chr20 (48914795-48914509)
               

               
               373-544, gnl|hg17|chr19 (16612156-16612468)
               

               
               373-544, gnl|Hg17|chr19 (16612342-16612150)
               

               
               373-544, gnl|loxAfr1|scaffold_8936 (37894-38248)
               

               
               373-544, gnl|panTro1|chr20 (17297897-17298212)
               

               
               373-544, gnl|rheMac2|chr19 (16187589-16187894)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               isp (0.150376)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               spc (0.113366)

	373-544, gnl\|bosTau2\|chr7 (5882027-5881858)
	373-544, gnl\|canFam2\|chr20 (48914795-48914509)
	373-544, gnl\|hg17\|chr19 (16612156-16612468)
	373-544, gnl\|Hg17\|chr19 (16612342-16612150)
	373-544, gnl\|loxAfr1\|scaffold_8936 (37894-38248)
	373-544, gnl\|panTro1\|chr20 (17297897-17298212)
	373-544, gnl\|rheMac2\|chr19 (16187589-16187894)