Non-Coding RNA Search

Ss1.1-rspc003_k16.5

Sequence:


               
               AGTGGTTGGGTGACCACATGGCAGAGGAGCCTCATGAGAGTGGAGACATAAGAACTTCAT
TCAGAACCGTGACATTTAGCAAGTACTAAACACATGAGAAGCTGAAAAAATGAGTCTGAT
CCCGAGTTATCCAAAAGTACTAAGACAGAAATGCCAAATTTCTTCCACTAGAATAAAAGC
TCCCAGAGGGCAGGGACTTTTTTAGATTGCCAAGTCCACTCTCCTTCTGTGCCTAACACA
CTGCAGGTGTCCAGTAATGTTAAGTGAGTAAAAGGGAGAACAGTCACTTTTGAAATTTTC
ATTCAGTTCCTCTCTTAACAACTTCTGTAAAATTGTACTCAGAAAAGGAATTCTCCAAGG
TTTGGAGGACATTTAAATTAGACACATGGGCCCATTTTCTCAGCCCTATAGGTCCTGTGA
ACTAGTGTTTATCAAACTGAAGGTTGTAACCCATTGGTGGGTCCAGAAGAGTCACTTCAC
CGGGTTGCAGCCAGCACTTTTGTATGCTAACGATTCTTGAGAGATGTAATTTGCATGCGG
TCACATGCATAACTTTCATGTTTACAGCTTCATGAATTTTGATAAATGTATCTACCTGTG
TAATTACGAAGGACAATATATACAATATTTCTATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGTTGGGTGACCACATGGCAGAGGAGCCTCATGAGAGTGGAGACATAAGAACTTCAT
TCAGAACCGTGACATTTAGCAAGTACTAAACACATGAGAAGCTGAAAAAATGAGTCTGAT
CCCGAGTTATCCAAAAGTACTAAGACAGAAATGCCAAATTTCTTCCACTAGAATAAAAGC
TCCCAGAGGGCAGGGACTTTTTTAGATTGCCAAGTCCACTCTCCTTCTGTGCCTAACACA
CTGCAGGTGTCCAGTAATGTTAAGTGAGTAAAAGGGAGAACAGTCACTTTTGAAATTTTC
ATTCAGTTCCTCTCTTAACAACTTCTGTAAAATTGTACTCAGAAAAGGAATTCTCCAAGG
TTTGGAGGACATTTAAATTAGACACATGGGCCCATTTTCTCAGCCCTATAGGTCCTGTGA
ACTAGTGTTTATCAAACTGAAGGTTGTAACCCATTGGTGGGTCCAGAAGAGTCACTTCAC
CGGGTTGCAGCCAGCACTTTTGTATGCTAACGATTCTTGAGAGATGTAATTTGCATGCGG
TCACATGCATAACTTTCATGTTTACAGCTTCATGAATTTTGATAAATGTATCTACCTGTG
TAATTACGAAGGACAATATATACAATATTTCTATTAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               2-638, gnl|bosTau2|chr14 (25837378-25838009)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-638, gnl|bosTau2|chr14 (25837378-25838009)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	cbe (0.239234)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	pty (0.142714)
	ova (0.129132)
	spc (0.113366)