Ss1.1-rspc003_k9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGAAGTTTATAGAATCTATATATTTTCTCTCTTTCTGGGATATTTACTGCAGTTCGAGA ATTCAGCTTTGTTGGTGTCTCCTTTATTAAGTTTAGTAGTAGCCTTAATGCTTGCTAAGT GCCTTCAGCTGAATGTGAAAAAAGAAACTTTCGTAGCCAAAATAATGAAAGTAATAAATT TTTACTTGGTGTGTACTCTGACAGTGACCCTGAATGTTATAATGAAGATGTTTGTCCCAC ACAAAGAAAATGGACATATGCTGAAATTTCTTGAAGTAAAATTTGGGCTAAATATGACTA AGAATTTTACAATGAATTGGCTCCTATGTCAAGAATCTCTTCAGGCACCATCTCAAGATT TTTTTTTGCGATTGACACAGTCTTCTTTATTACCTTTTTATATTTTAGTGTTAGTTATTT GTTTTCTTTCTATGATTCAAGTTATTTTTCGGAGAATTAGTGGTAAGTCCCTGAAAGAAA CTATTACACTTGAAGATGGGCGAATTGGAGAAAGGCCAGAAATCATTTATCATGTGATTC ACACTATTTTATTGGGCTCTCTTGCAATGGTTATAGAAGGCTTGAAATACCTCTGGACTC CTTACGTGTGCATGTTAGCAGCGTTTGGTGTATGTTCTCCTGAACTTTGGATGACACTTT TCAAGTGGCTTCGATTACGGACTGTACATCCAGTATTGTTGGCTCTTATTCTAAGCACGG CTGTGCCCACTATAATAGGTCTCAGCTTATGGAAGGAGAAGGCAAGCTCCAGTTGCAGCT GTGTTTGCAGGAAGTCCACAATTAATGGCTGCAATTAAATTATGCACTGGATGGATGGTG ACAAGCTTGCCTCTTTACAATGATGATGACTTTCTCAAGCGAAATGAAAATATCTATCAA ATCTATTCAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGAAGTTTATAGAATCTATATATTTTCTCTCTTTCTGGGATATTTACTGCAGTTCGAGA ATTCAGCTTTGTTGGTGTCTCCTTTATTAAGTTTAGTAGTAGCCTTAATGCTTGCTAAGT GCCTTCAGCTGAATGTGAAAAAAGAAACTTTCGTAGCCAAAATAATGAAAGTAATAAATT TTTACTTGGTGTGTACTCTGACAGTGACCCTGAATGTTATAATGAAGATGTTTGTCCCAC ACAAAGAAAATGGACATATGCTGAAATTTCTTGAAGTAAAATTTGGGCTAAATATGACTA AGAATTTTACAATGAATTGGCTCCTATGTCAAGAATCTCTTCAGGCACCATCTCAAGATT TTTTTTTGCGATTGACACAGTCTTCTTTATTACCTTTTTATATTTTAGTGTTAGTTATTT GTTTTCTTTCTATGATTCAAGTTATTTTTCGGAGAATTAGTGGTAAGTCCCTGAAAGAAA CTATTACACTTGAAGATGGGCGAATTGGAGAAAGGCCAGAAATCATTTATCATGTGATTC ACACTATTTTATTGGGCTCTCTTGCAATGGTTATAGAAGGCTTGAAATACCTCTGGACTC CTTACGTGTGCATGTTAGCAGCGTTTGGTGTATGTTCTCCTGAACTTTGGATGACACTTT TCAAGTGGCTTCGATTACGGACTGTACATCCAGTATTGTTGGCTCTTATTCTAAGCACGG CTGTGCCCACTATAATAGGTCTCAGCTTATGGAAGGAGAAGGCAAGCTCCAGTTGCAGCT GTGTTTGCAGGAAGTCCACAATTAATGGCTGCAATTAAATTATGCACTGGATGGATGGTG ACAAGCTTGCCTCTTTACAATGATGATGACTTTCTCAAGCGAAATGAAAATATCTATCAA ATCTATTCAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 757-875, + strand, RNAz p=0.647145 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 757-875, + strand, RNAz p=0.647145 |
| Aligned organism(s): 105 entry(ies) | More info |
| Aligned organism(s): 105 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr14 (42738084-42738265) | |
| 1-183, gnl|canFam2|chr29 (42409331-42409458) | |
| 1-183, gnl|dasNov1|scaffold_91335 (857-730) | |
| 1-183, gnl|fr1|chrUn (215157301-215157175) | |
| 1-183, gnl|hg17|chr7 (144718683-144718810) | |
| 1-183, gnl|Hg17|chr8 (95846591-95847057) | |
| 1-183, gnl|loxAfr1|scaffold_110932 (4677-4804) | |
| 1-183, gnl|mm7|chr4 (11217668-11217541) | |
| 1-183, gnl|Mm7|chr4 (11217665-11217483) | |
| 1-183, gnl|monDom2|scaffold_3 (70826397-70826270) | |
| 1-183, gnl|oryCun1|scaffold_193780 (118440-118548) | |
| 1-183, gnl|panTro1|chr6 (147389904-147390030) | |
| 1-183, gnl|rheMac2|chr3 (182885318-182885445) | |
| 1-183, gnl|rn3|chr5 (25130483-25130356) | |
| 1-183, gnl|tetNig1|chr21 (584034-584161) | |
| 1-183, gnl|xenTro1|scaffold_3 (6197028-6196903) | |
| 299-484, gnl|bosTau2|chr14 (42744442-42744625) | |
| 299-484, gnl|canFam2|chr29 (42414539-42414660) | |
| 299-484, gnl|canFam2|chr29 (42414700-42414586) | |
| 299-484, gnl|dasNov1|scaffold_124605 (1692-1571) | |
| 299-484, gnl|dasNov1|scaffold_124605 (1531-1645) | |
| 299-484, gnl|fr1|chrUn (215156450-215156326) | |
| 299-484, gnl|fr1|chrUn (215156260-215156400) | |
| 299-484, gnl|galGal2|chr2 (125623510-125623631) | |
| 299-484, gnl|hg17|chr1 (245276412-245276531) | |
| 299-484, gnl|hg17|chr8 (95849797-95849918) | |
| 299-484, gnl|Hg17|chr8 (95849796-95849979) | |
| 299-484, gnl|loxAfr1|scaffold_48269 (1288-1409) | |
| 299-484, gnl|loxAfr1|scaffold_48269 (1449-1335) | |
| 299-484, gnl|mm7|chr4 (11214784-11214663) | |
| 299-484, gnl|mm7|chr4 (11214624-11214737) | |
| 299-484, gnl|Mm7|chr4 (11214783-11214600) | |
| 299-484, gnl|monDom2|scaffold_3 (70823616-70823495) | |
| 299-484, gnl|monDom2|scaffold_3 (70823455-70823569) | |
| 299-484, gnl|oryCun1|scaffold_193780 (122118-122239) | |
| 299-484, gnl|oryCun1|scaffold_193780 (122279-122165) | |
| 299-484, gnl|panTro1|chr1 (229403060-229403179) | |
| 299-484, gnl|panTro1|chr7 (98081926-98082047) | |
| 299-484, gnl|rheMac2|chr3 (182885618-182885751) | |
| 299-484, gnl|rheMac2|chr3 (182885791-182885665) | |
| 299-484, gnl|rn3|chr5 (25124764-25124643) | |
| 299-484, gnl|rn3|chr5 (25124604-25124717) | |
| 299-484, gnl|tetNig1|chr21 (584895-585019) | |
| 299-484, gnl|tetNig1|chr21 (585086-584945) | |
| 299-484, gnl|xenTro1|scaffold_3 (6195571-6195450) | |
| 299-484, gnl|xenTro1|scaffold_3 (6195412-6195524) | |
| 580-702, gnl|bosTau2|chr14 (42748295-42748417) | |
| 580-702, gnl|canFam2|chr29 (42422030-42422193) | |
| 580-702, gnl|canFam2|chr29 (42422163-42422043) | |
| 580-702, gnl|dasNov1|scaffold_10540 (50788-50625) | |
| 580-702, gnl|dasNov1|scaffold_10540 (50655-50775) | |
| 580-702, gnl|echTel1|scaffold_306481 (1698-1861) | |
| 580-702, gnl|echTel1|scaffold_306481 (1831-1710) | |
| 580-702, gnl|fr1|chrUn (215156012-215155856) | |
| 580-702, gnl|fr1|chrUn (215155882-215155993) | |
| 580-702, gnl|galGal2|chr2 (125626619-125626761) | |
| 580-702, gnl|galGal2|chr2 (125626749-125626631) | |
| 580-702, gnl|hg17|chr1 (245276172-245276293) | |
| 580-702, gnl|hg17|chr8 (95859058-95859210) | |
| 580-702, gnl|Hg17|chr8 (95859069-95859191) | |
| 580-702, gnl|loxAfr1|scaffold_48269 (4078-4242) | |
| 580-702, gnl|loxAfr1|scaffold_48269 (4212-4092) | |
| 580-702, gnl|mm7|chr4 (11208285-11208122) | |
| 580-702, gnl|mm7|chr4 (11208152-11208273) | |
| 580-702, gnl|Mm7|chr4 (11208272-11208150) | |
| 580-702, gnl|monDom2|scaffold_3 (70820479-70820324) | |
| 580-702, gnl|monDom2|scaffold_3 (70820346-70820466) | |
| 580-702, gnl|oryCun1|scaffold_189279 (50225-50348) | |
| 580-702, gnl|panTro1|chr1 (229402820-229402941) | |
| 580-702, gnl|panTro1|chr7 (98091222-98091374) | |
| 580-702, gnl|rheMac2|chr3 (182886032-182885911) | |
| 580-702, gnl|rheMac2|chr8 (97350409-97350569) | |
| 580-702, gnl|rn3|chr5 (25117159-25116996) | |
| 580-702, gnl|rn3|chr5 (25117026-25117147) | |
| 580-702, gnl|tetNig1|chr21 (585348-585495) | |
| 580-702, gnl|tetNig1|chr21 (585447-585362) | |
| 580-702, gnl|xenTro1|scaffold_3 (6193270-6193119) | |
| 580-702, gnl|xenTro1|scaffold_3 (6193143-6193261) | |
| 757-890, gnl|bosTau2|chr14 (42755057-42755190) | |
| 757-890, gnl|canFam2|chr29 (42431837-42432001) | |
| 757-890, gnl|canFam2|chr29 (42431976-42431844) | |
| 757-890, gnl|fr1|chrUn (215155402-215155233) | |
| 757-890, gnl|fr1|chrUn (215155258-215155459) | |
| 757-890, gnl|galGal2|chr2 (125631872-125632033) | |
| 757-890, gnl|galGal2|chr2 (125632011-125631879) | |
| 757-890, gnl|hg17|chr1 (245275903-245276032) | |
| 757-890, gnl|hg17|chr8 (95865068-95865232) | |
| 757-890, gnl|Hg17|chr8 (95865072-95865205) | |
| 757-890, gnl|loxAfr1|scaffold_2906 (352-516) | |
| 757-890, gnl|loxAfr1|scaffold_2906 (491-359) | |
| 757-890, gnl|mm7|chr4 (11200294-11200133) | |
| 757-890, gnl|mm7|chr4 (11200155-11200287) | |
| 757-890, gnl|Mm7|chr4 (11200288-11200155) | |
| 757-890, gnl|monDom2|scaffold_3 (70806706-70806542) | |
| 757-890, gnl|monDom2|scaffold_3 (70804159-70804304) | |
| 757-890, gnl|panTro1|chr1 (229402551-229402680) | |
| 757-890, gnl|panTro1|chr7 (98097228-98097392) | |
| 757-890, gnl|rheMac2|chr8 (97356723-97356887) | |
| 757-890, gnl|rheMac2|chr8 (97356862-97356730) | |
| 757-890, gnl|rn3|chr5 (25109840-25109678) | |
| 757-890, gnl|rn3|chr5 (25109702-25109834) | |
| 757-890, gnl|tetNig1|chr21 (586011-586145) | |
| 757-890, gnl|tetNig1|chr21 (586140-585942) | |
| 757-890, gnl|xenTro1|scaffold_3 (6190624-6190450) | |
| 757-890, gnl|xenTro1|scaffold_3 (6190485-6190617) |
| Aligned organism(s): 105 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr14 (42738084-42738265) | |
| 1-183, gnl|canFam2|chr29 (42409331-42409458) | |
| 1-183, gnl|dasNov1|scaffold_91335 (857-730) | |
| 1-183, gnl|fr1|chrUn (215157301-215157175) | |
| 1-183, gnl|hg17|chr7 (144718683-144718810) | |
| 1-183, gnl|Hg17|chr8 (95846591-95847057) | |
| 1-183, gnl|loxAfr1|scaffold_110932 (4677-4804) | |
| 1-183, gnl|mm7|chr4 (11217668-11217541) | |
| 1-183, gnl|Mm7|chr4 (11217665-11217483) | |
| 1-183, gnl|monDom2|scaffold_3 (70826397-70826270) | |
| 1-183, gnl|oryCun1|scaffold_193780 (118440-118548) | |
| 1-183, gnl|panTro1|chr6 (147389904-147390030) | |
| 1-183, gnl|rheMac2|chr3 (182885318-182885445) | |
| 1-183, gnl|rn3|chr5 (25130483-25130356) | |
| 1-183, gnl|tetNig1|chr21 (584034-584161) | |
| 1-183, gnl|xenTro1|scaffold_3 (6197028-6196903) | |
| 299-484, gnl|bosTau2|chr14 (42744442-42744625) | |
| 299-484, gnl|canFam2|chr29 (42414539-42414660) | |
| 299-484, gnl|canFam2|chr29 (42414700-42414586) | |
| 299-484, gnl|dasNov1|scaffold_124605 (1692-1571) | |
| 299-484, gnl|dasNov1|scaffold_124605 (1531-1645) | |
| 299-484, gnl|fr1|chrUn (215156450-215156326) | |
| 299-484, gnl|fr1|chrUn (215156260-215156400) | |
| 299-484, gnl|galGal2|chr2 (125623510-125623631) | |
| 299-484, gnl|hg17|chr1 (245276412-245276531) | |
| 299-484, gnl|hg17|chr8 (95849797-95849918) | |
| 299-484, gnl|Hg17|chr8 (95849796-95849979) | |
| 299-484, gnl|loxAfr1|scaffold_48269 (1288-1409) | |
| 299-484, gnl|loxAfr1|scaffold_48269 (1449-1335) | |
| 299-484, gnl|mm7|chr4 (11214784-11214663) | |
| 299-484, gnl|mm7|chr4 (11214624-11214737) | |
| 299-484, gnl|Mm7|chr4 (11214783-11214600) | |
| 299-484, gnl|monDom2|scaffold_3 (70823616-70823495) | |
| 299-484, gnl|monDom2|scaffold_3 (70823455-70823569) | |
| 299-484, gnl|oryCun1|scaffold_193780 (122118-122239) | |
| 299-484, gnl|oryCun1|scaffold_193780 (122279-122165) | |
| 299-484, gnl|panTro1|chr1 (229403060-229403179) | |
| 299-484, gnl|panTro1|chr7 (98081926-98082047) | |
| 299-484, gnl|rheMac2|chr3 (182885618-182885751) | |
| 299-484, gnl|rheMac2|chr3 (182885791-182885665) | |
| 299-484, gnl|rn3|chr5 (25124764-25124643) | |
| 299-484, gnl|rn3|chr5 (25124604-25124717) | |
| 299-484, gnl|tetNig1|chr21 (584895-585019) | |
| 299-484, gnl|tetNig1|chr21 (585086-584945) | |
| 299-484, gnl|xenTro1|scaffold_3 (6195571-6195450) | |
| 299-484, gnl|xenTro1|scaffold_3 (6195412-6195524) | |
| 580-702, gnl|bosTau2|chr14 (42748295-42748417) | |
| 580-702, gnl|canFam2|chr29 (42422030-42422193) | |
| 580-702, gnl|canFam2|chr29 (42422163-42422043) | |
| 580-702, gnl|dasNov1|scaffold_10540 (50788-50625) | |
| 580-702, gnl|dasNov1|scaffold_10540 (50655-50775) | |
| 580-702, gnl|echTel1|scaffold_306481 (1698-1861) | |
| 580-702, gnl|echTel1|scaffold_306481 (1831-1710) | |
| 580-702, gnl|fr1|chrUn (215156012-215155856) | |
| 580-702, gnl|fr1|chrUn (215155882-215155993) | |
| 580-702, gnl|galGal2|chr2 (125626619-125626761) | |
| 580-702, gnl|galGal2|chr2 (125626749-125626631) | |
| 580-702, gnl|hg17|chr1 (245276172-245276293) | |
| 580-702, gnl|hg17|chr8 (95859058-95859210) | |
| 580-702, gnl|Hg17|chr8 (95859069-95859191) | |
| 580-702, gnl|loxAfr1|scaffold_48269 (4078-4242) | |
| 580-702, gnl|loxAfr1|scaffold_48269 (4212-4092) | |
| 580-702, gnl|mm7|chr4 (11208285-11208122) | |
| 580-702, gnl|mm7|chr4 (11208152-11208273) | |
| 580-702, gnl|Mm7|chr4 (11208272-11208150) | |
| 580-702, gnl|monDom2|scaffold_3 (70820479-70820324) | |
| 580-702, gnl|monDom2|scaffold_3 (70820346-70820466) | |
| 580-702, gnl|oryCun1|scaffold_189279 (50225-50348) | |
| 580-702, gnl|panTro1|chr1 (229402820-229402941) | |
| 580-702, gnl|panTro1|chr7 (98091222-98091374) | |
| 580-702, gnl|rheMac2|chr3 (182886032-182885911) | |
| 580-702, gnl|rheMac2|chr8 (97350409-97350569) | |
| 580-702, gnl|rn3|chr5 (25117159-25116996) | |
| 580-702, gnl|rn3|chr5 (25117026-25117147) | |
| 580-702, gnl|tetNig1|chr21 (585348-585495) | |
| 580-702, gnl|tetNig1|chr21 (585447-585362) | |
| 580-702, gnl|xenTro1|scaffold_3 (6193270-6193119) | |
| 580-702, gnl|xenTro1|scaffold_3 (6193143-6193261) | |
| 757-890, gnl|bosTau2|chr14 (42755057-42755190) | |
| 757-890, gnl|canFam2|chr29 (42431837-42432001) | |
| 757-890, gnl|canFam2|chr29 (42431976-42431844) | |
| 757-890, gnl|fr1|chrUn (215155402-215155233) | |
| 757-890, gnl|fr1|chrUn (215155258-215155459) | |
| 757-890, gnl|galGal2|chr2 (125631872-125632033) | |
| 757-890, gnl|galGal2|chr2 (125632011-125631879) | |
| 757-890, gnl|hg17|chr1 (245275903-245276032) | |
| 757-890, gnl|hg17|chr8 (95865068-95865232) | |
| 757-890, gnl|Hg17|chr8 (95865072-95865205) | |
| 757-890, gnl|loxAfr1|scaffold_2906 (352-516) | |
| 757-890, gnl|loxAfr1|scaffold_2906 (491-359) | |
| 757-890, gnl|mm7|chr4 (11200294-11200133) | |
| 757-890, gnl|mm7|chr4 (11200155-11200287) | |
| 757-890, gnl|Mm7|chr4 (11200288-11200155) | |
| 757-890, gnl|monDom2|scaffold_3 (70806706-70806542) | |
| 757-890, gnl|monDom2|scaffold_3 (70804159-70804304) | |
| 757-890, gnl|panTro1|chr1 (229402551-229402680) | |
| 757-890, gnl|panTro1|chr7 (98097228-98097392) | |
| 757-890, gnl|rheMac2|chr8 (97356723-97356887) | |
| 757-890, gnl|rheMac2|chr8 (97356862-97356730) | |
| 757-890, gnl|rn3|chr5 (25109840-25109678) | |
| 757-890, gnl|rn3|chr5 (25109702-25109834) | |
| 757-890, gnl|tetNig1|chr21 (586011-586145) | |
| 757-890, gnl|tetNig1|chr21 (586140-585942) | |
| 757-890, gnl|xenTro1|scaffold_3 (6190624-6190450) | |
| 757-890, gnl|xenTro1|scaffold_3 (6190485-6190617) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.127291) | |
| spc (0.113366) |