Non-Coding RNA Search

Ss1.1-rspc003_l21.5

Sequence:


               
               TCGTCGCAATCGGATTCCTTAAACATTTTAAAAATTAATCAACTCCATGTCTTTTTAGGT
AGGGATGCAAAACATGAAATCTAAACAAAAACTACAAATCGCCAGAGATTAAAAATCTGT
TACCAATACAGTGGTATAAACACCGTATCTTCAAGGACCACAATATCCAATGTTAAGGGA
TGGTTAACAGCAATAACATTGTTGGGATGCATAACACAGGGTCAAAGACCAAAAAAGATT
CTACACTACTGAAACCGGAAACTCAGTCTTTAATACTTCTTATTGACAGGGTTGAAAGAA
TTCCTACAAAATTCTTGTAGAATTTAATCTAATATCCTTTTACTTCTACTCTGTTTATCC
TAGAAATCTAATATGTTCACATGACTCTGCAACCACTAAACAAGAGAATGAATGAGGACT
AGGCTAAACGTTAATGCTAATGAACAGAAGTTCCACTGCGATTTACCTTGATCAGAATAA
ACACTACTGAAACACTAGTAATAACAGAGAATTTATAATACTAATAAATACTAGCTTTAA
AAAAAATGTCCACCTATGGTACCCAATATATTGTCATATGGCACTGAGTTTGAAACAACA
TGTATCATTTAAATTTAATCATTAACTAACACTAATTACTATTACTCTTAATTTTGGATT
ATACACATATGTACACACTTATACCTGCTCCAAAAACACATCATTCACAAGAATAGCTGG
CATGTCCCAGGCTTTATTCTAAATTCTCATACTTTACCATGTTATCAGAATCACCTGGGG
AGACTGCAGCCTCCCCACCCAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTCGCAATCGGATTCCTTAAACATTTTAAAAATTAATCAACTCCATGTCTTTTTAGGT
AGGGATGCAAAACATGAAATCTAAACAAAAACTACAAATCGCCAGAGATTAAAAATCTGT
TACCAATACAGTGGTATAAACACCGTATCTTCAAGGACCACAATATCCAATGTTAAGGGA
TGGTTAACAGCAATAACATTGTTGGGATGCATAACACAGGGTCAAAGACCAAAAAAGATT
CTACACTACTGAAACCGGAAACTCAGTCTTTAATACTTCTTATTGACAGGGTTGAAAGAA
TTCCTACAAAATTCTTGTAGAATTTAATCTAATATCCTTTTACTTCTACTCTGTTTATCC
TAGAAATCTAATATGTTCACATGACTCTGCAACCACTAAACAAGAGAATGAATGAGGACT
AGGCTAAACGTTAATGCTAATGAACAGAAGTTCCACTGCGATTTACCTTGATCAGAATAA
ACACTACTGAAACACTAGTAATAACAGAGAATTTATAATACTAATAAATACTAGCTTTAA
AAAAAATGTCCACCTATGGTACCCAATATATTGTCATATGGCACTGAGTTTGAAACAACA
TGTATCATTTAAATTTAATCATTAACTAACACTAATTACTATTACTCTTAATTTTGGATT
ATACACATATGTACACACTTATACCTGCTCCAAAAACACATCATTCACAAGAATAGCTGG
CATGTCCCAGGCTTTATTCTAAATTCTCATACTTTACCATGTTATCAGAATCACCTGGGG
AGACTGCAGCCTCCCCACCCAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               436-553, - strand, RNAz p=0.787315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-553, - strand, RNAz p=0.787315

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               93-782, gnl|bosTau2|chr9 (48815829-48816528)
               

               
               93-782, gnl|Hg17|chr6 (146159585-146160321)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-782, gnl|bosTau2|chr9 (48815829-48816528)
               

               
               93-782, gnl|Hg17|chr6 (146159585-146160321)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	93-782, gnl\|bosTau2\|chr9 (48815829-48816528)
	93-782, gnl\|Hg17\|chr6 (146159585-146160321)