Non-Coding RNA Search

Ss1.1-rspc003_l23.5

Sequence:


               
               GGAAAGAAGCCAGGTGAGAAGAGAGTCTCTAGCAGCAAAGCAGGATCCGACATCACACGA
TTTTCGGTAAAGAAATGAAGTATAAAAATTTTTGAATGGATGACAAATGGTTTATATGTG
GAGAATTCAACATTTTTTCATATTTGTCTTTTTTTCAATATTTTAAGACTAGAAATTTTC
AGAAGAAAAATCAAGACTTCAACTTCCCTTTTCATGTTAAATGCTTTTAGTGTTCCCTGC
CTTTTGAAAGTACATAACAGAAACTGAGATACAATACTAAATATTTCTACAACCTTTTTG
ATTTCATGCAGACTCTCAATTATGTTTTGGTAAGATTTTGTTAAGCTTCCATTTCCCATG
ACTATACCTTAATCATAGTATTATACATAGATTGTTTTTGAAAAATATACTCTCAAGTAC
TTGAAAAATCCTGCTGGATTAGTATTGGTTCTGGATGGCTGTGTGTCTAAATGGAACATT
GTAAAGCCATAAGGGAAATTTAAGAGGCAAATCATGATTATTCAGGAATTCTGTGCCAAG
TGTGACCTGCCTGCTTAGTATGCAAGAGGGACTCTTGTTCACTAAATGCCTCCAAAATGG
GCTGGGGGTACACATTGTGAGTGTTGTCTTCTTGTTTTATGTTTAAGCCAGTTGTCTTTA
TTGAAAAGATGCTTTTGAAAGTAAGCTAATTGAGCCTATGCTGTTTGTAGACAATTTAGG
CATTCTAGCTAAAGTAATTGTTAAGAATGTTTAAAAACTGAAAGCATAAAATTTTAAATG
CCGCTTAAGCTTCGTTTTTTTTTTTTAGTTTGTTTTAATGCCTAATACTAGGCTTACTAT
CAAAGCACCCTTTTTCTCCTGGTTTCTCATTTTCTGTTTTTAAAATTCTGTTTTATTAAA
AGTATATTCCTGAAACCTCTTTTAAAAGGAGTAATGATGATAAAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGAAGCCAGGTGAGAAGAGAGTCTCTAGCAGCAAAGCAGGATCCGACATCACACGA
TTTTCGGTAAAGAAATGAAGTATAAAAATTTTTGAATGGATGACAAATGGTTTATATGTG
GAGAATTCAACATTTTTTCATATTTGTCTTTTTTTCAATATTTTAAGACTAGAAATTTTC
AGAAGAAAAATCAAGACTTCAACTTCCCTTTTCATGTTAAATGCTTTTAGTGTTCCCTGC
CTTTTGAAAGTACATAACAGAAACTGAGATACAATACTAAATATTTCTACAACCTTTTTG
ATTTCATGCAGACTCTCAATTATGTTTTGGTAAGATTTTGTTAAGCTTCCATTTCCCATG
ACTATACCTTAATCATAGTATTATACATAGATTGTTTTTGAAAAATATACTCTCAAGTAC
TTGAAAAATCCTGCTGGATTAGTATTGGTTCTGGATGGCTGTGTGTCTAAATGGAACATT
GTAAAGCCATAAGGGAAATTTAAGAGGCAAATCATGATTATTCAGGAATTCTGTGCCAAG
TGTGACCTGCCTGCTTAGTATGCAAGAGGGACTCTTGTTCACTAAATGCCTCCAAAATGG
GCTGGGGGTACACATTGTGAGTGTTGTCTTCTTGTTTTATGTTTAAGCCAGTTGTCTTTA
TTGAAAAGATGCTTTTGAAAGTAAGCTAATTGAGCCTATGCTGTTTGTAGACAATTTAGG
CATTCTAGCTAAAGTAATTGTTAAGAATGTTTAAAAACTGAAAGCATAAAATTTTAAATG
CCGCTTAAGCTTCGTTTTTTTTTTTTAGTTTGTTTTAATGCCTAATACTAGGCTTACTAT
CAAAGCACCCTTTTTCTCCTGGTTTCTCATTTTCTGTTTTTAAAATTCTGTTTTATTAAA
AGTATATTCCTGAAACCTCTTTTAAAAGGAGTAATGATGATAAAACAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-948, gnl|bosTau2|chr2 (38268949-38269855)
               

               
               1-948, gnl|Hg17|chr2 (135791722-135790470)
               

               
               1-948, gnl|Mm7|chr1 (127834897-127834092)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chr2 (38268949-38269855)
               

               
               1-948, gnl|Hg17|chr2 (135791722-135790470)
               

               
               1-948, gnl|Mm7|chr1 (127834897-127834092)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               pan (0.23596)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               spc (0.113366)

	1-948, gnl\|bosTau2\|chr2 (38268949-38269855)
	1-948, gnl\|Hg17\|chr2 (135791722-135790470)
	1-948, gnl\|Mm7\|chr1 (127834897-127834092)