Non-Coding RNA Search

Ss1.1-rspc003_l7.5

Sequence:


               
               TTTGCTGTCGAATGCCTCTTTAGACCAAGGGTACACTGACTTTGCTATCTAAGGACAGTT
GGGGCTGCAGGGATGTGGGGTGTGGGTGCTAGGAACTAGCCAGAGACGATCCACGGGACG
AAAACTCCGCACACGGTCACCGGATTAGCTGCTAACGTGTATGACTGATAGTGGAGTGAA
AACGCCTTCCTTTGGCCAAGTCAAAGAGAAGAGTCGAAGAAAATGCTGAAGGCATCGACA
GGAAAGGCGTTTCAGCCCAGCCCTCGAAGACCTGTAAGGAAAACTGTAGATTCTGTGCTT
TTGAACAAATGGAGCAGGAGATTTTAGAGGTAAGAATAGAGAAAAACGAAACTAACTTCC
TTTAGGGACCCCGAGCTAGTTGGCTAAATTTTTTTTAATAGAGAAATAAACCTTTTTCTG
AAAAAGAAATAATTGTAAGCCTTGGGGAAAGTTCTCTTATTTTTTCCAAGTTAGATCAGC
ATAGCGTCCCTGTTGTCTTAGAGGTCAAACCCCTATTTTGATTAATACCCCAGTGTAAGA
GTTATAGCAATAAGAGAAATGGAATCTATTTTTGTTTCACGTCTTTACCTCATAGTATTC
ATAAGACAGTGGACAGAGCTCACCCTGAATATACTGCGTCTGCGTGTCATTCTCTCTCTC
TAACGGTGGTCACTTTCAAGGGTCTAAGAAAGCGGGGTTAATCCTAAAGAGTAAATGTTT
CTTGAACTGATTTTGTTCTGTGGTACAAATAACACCTGTGTATATCATATCTGTATATAT
CTGAACCGAGTTGTATGCAGAGACATTGATATAACTATATTTACAGAAGACAGTTTTTAC
AATTAAAATGCACATTTTAACATGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCTGTCGAATGCCTCTTTAGACCAAGGGTACACTGACTTTGCTATCTAAGGACAGTT
GGGGCTGCAGGGATGTGGGGTGTGGGTGCTAGGAACTAGCCAGAGACGATCCACGGGACG
AAAACTCCGCACACGGTCACCGGATTAGCTGCTAACGTGTATGACTGATAGTGGAGTGAA
AACGCCTTCCTTTGGCCAAGTCAAAGAGAAGAGTCGAAGAAAATGCTGAAGGCATCGACA
GGAAAGGCGTTTCAGCCCAGCCCTCGAAGACCTGTAAGGAAAACTGTAGATTCTGTGCTT
TTGAACAAATGGAGCAGGAGATTTTAGAGGTAAGAATAGAGAAAAACGAAACTAACTTCC
TTTAGGGACCCCGAGCTAGTTGGCTAAATTTTTTTTAATAGAGAAATAAACCTTTTTCTG
AAAAAGAAATAATTGTAAGCCTTGGGGAAAGTTCTCTTATTTTTTCCAAGTTAGATCAGC
ATAGCGTCCCTGTTGTCTTAGAGGTCAAACCCCTATTTTGATTAATACCCCAGTGTAAGA
GTTATAGCAATAAGAGAAATGGAATCTATTTTTGTTTCACGTCTTTACCTCATAGTATTC
ATAAGACAGTGGACAGAGCTCACCCTGAATATACTGCGTCTGCGTGTCATTCTCTCTCTC
TAACGGTGGTCACTTTCAAGGGTCTAAGAAAGCGGGGTTAATCCTAAAGAGTAAATGTTT
CTTGAACTGATTTTGTTCTGTGGTACAAATAACACCTGTGTATATCATATCTGTATATAT
CTGAACCGAGTTGTATGCAGAGACATTGATATAACTATATTTACAGAAGACAGTTTTTAC
AATTAAAATGCACATTTTAACATGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|15706455|gb|AAH12493.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|15706455|gb|AAH12493.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               716-866, + strand, RNAz p=0.868365

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               716-866, + strand, RNAz p=0.868365

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC012493, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC012493, +

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-207, gnl|bosTau2|chr13 (54280405-54280612)
               

               
               1-207, gnl|canFam2|chr16 (10523169-10522687)
               

               
               1-207, gnl|dasNov1|scaffold_67159 (1233-694)
               

               
               1-207, gnl|hg17|chr7 (140810285-140810813)
               

               
               1-207, gnl|Hg17|chr7 (140810610-140810406)
               

               
               1-207, gnl|loxAfr1|scaffold_24223 (30063-29547)
               

               
               1-207, gnl|mm7|chr6 (40331964-40332443)
               

               
               1-207, gnl|Mm7|chr6 (40332261-40332037)
               

               
               1-207, gnl|oryCun1|scaffold_177439 (8982-9380)
               

               
               1-207, gnl|panTro1|chr6 (143566335-143566863)
               

               
               1-207, gnl|rheMac2|chr3 (179132771-179133295)
               

               
               1-207, gnl|rn3|chr4 (68233832-68234282)
               


               
               247-866, gnl|bosTau2|chr13 (54280615-54281229)
               

               
               247-866, gnl|Hg17|chr7 (140810403-140809712)
               

               
               247-866, gnl|Mm7|chr6 (40332034-40331399)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-207, gnl|bosTau2|chr13 (54280405-54280612)
               

               
               1-207, gnl|canFam2|chr16 (10523169-10522687)
               

               
               1-207, gnl|dasNov1|scaffold_67159 (1233-694)
               

               
               1-207, gnl|hg17|chr7 (140810285-140810813)
               

               
               1-207, gnl|Hg17|chr7 (140810610-140810406)
               

               
               1-207, gnl|loxAfr1|scaffold_24223 (30063-29547)
               

               
               1-207, gnl|mm7|chr6 (40331964-40332443)
               

               
               1-207, gnl|Mm7|chr6 (40332261-40332037)
               

               
               1-207, gnl|oryCun1|scaffold_177439 (8982-9380)
               

               
               1-207, gnl|panTro1|chr6 (143566335-143566863)
               

               
               1-207, gnl|rheMac2|chr3 (179132771-179133295)
               

               
               1-207, gnl|rn3|chr4 (68233832-68234282)
               


               
               247-866, gnl|bosTau2|chr13 (54280615-54281229)
               

               
               247-866, gnl|Hg17|chr7 (140810403-140809712)
               

               
               247-866, gnl|Mm7|chr6 (40332034-40331399)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-207, gnl\|bosTau2\|chr13 (54280405-54280612)
	1-207, gnl\|canFam2\|chr16 (10523169-10522687)
	1-207, gnl\|dasNov1\|scaffold_67159 (1233-694)
	1-207, gnl\|hg17\|chr7 (140810285-140810813)
	1-207, gnl\|Hg17\|chr7 (140810610-140810406)
	1-207, gnl\|loxAfr1\|scaffold_24223 (30063-29547)
	1-207, gnl\|mm7\|chr6 (40331964-40332443)
	1-207, gnl\|Mm7\|chr6 (40332261-40332037)
	1-207, gnl\|oryCun1\|scaffold_177439 (8982-9380)
	1-207, gnl\|panTro1\|chr6 (143566335-143566863)
	1-207, gnl\|rheMac2\|chr3 (179132771-179133295)
	1-207, gnl\|rn3\|chr4 (68233832-68234282)

	247-866, gnl\|bosTau2\|chr13 (54280615-54281229)
	247-866, gnl\|Hg17\|chr7 (140810403-140809712)
	247-866, gnl\|Mm7\|chr6 (40332034-40331399)

	mgp (0.230681)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	eru (0.120048)
	spc (0.113366)
	eje (0.0988338)