Non-Coding RNA Search

Ss1.1-rspc003_o5.5

Sequence:


               
               ATGAATTCCCCATTTTGTACAATATATCTTTGTAGTTTATTTAATTTTATTTATTTGTTT
ATTTTGGCCATTCGCAAGGCATGTGGAAGTTCCTGGGCCAGGGATGGAACCTGTGCCACA
GCAGTGACCTCAGCTGCTACAGTGATAATGCCAGGTCCTTAACTTGTTGCATCACAAGGG
AACTCCATCCTTGTAGGTTATTTTACACATAATGGTTTGTACCTCTTAATTCCCTTCCCC
TGTGTTCCCTCTCCCCACTGGTAACCATGAGTTCGTTCTCTGTATCGGTGAGTCTGTTTC
TTTTTTGTTATATTCCCCAGTTTATTGTATTTTTTAGATTGCTTAGATTTTTTTAATAAT
AGCTAAAACTAAAAACTTACAAATAAGGCAATTACAGTTCTTGTCATTGACAAAGAAAAA
TGTTATGTTTAATATGTGTGTGTATATAAAAAAGTTTTAGGAAGCAATACTTTATGTGTT
TATATTTTTTCTTCTAAGAGCCCAAGATCATTCATAAGTAACTCCTTATGCAAGAATTTA
GAACTACTTGCATCATAATTTCAGTCTTTATCTCCTTTATAATATGTAGTACTCATTGGA
TCTTTGTCCTGATGACATTGTGCTAAAGATGAAACTGTTGGGGAGAAGTATTTCTGATAA
TATTTCGGACAGAATTCAAGAAATGTTAAACTGAATTCTGAATTACAGTCGCGGGCGGAA
TGAGGAGCGACGCTGACTCAGGCCCCCACCGGCGGGCGCGAGTGTCCCGCCTCGCGTCCT
TCAGCGCGTCCCATCGGCTCCACAGCAAATCTCTCAGTAATGAAGAAAACTTGAAACTCT
TTGGGAAATGCAACAATCCAAATGGCCATGGGCACAATTATAAAGTTGTGGTGACAGTAC
ATGGAGAGATTGATCCTGTTACAGGAATGGTTATGAATTTGACTGATCTCAAAAAGTATA
TGGAGGAGGCAATCATGAAGCCCCTTGATCATAAGAATCTGGATCTGGATGTGCCATACT
TTGCAGATGTTGTAAGCACAACAGAAAATGTAGCTGTGTATATATGGGAAAACCTCCAGA
AATACCTTCCTGCGGGAGTTCTTTATAAAGTAAAAGTATATGAAACTGACAATAATATTG
TAGTCTATAAAGGAGAATAGCTCTTAGAGATTAATACCATAGAAAGGTTTAATTACTTTC
CATATTTGAAGACAATCTTTATTCCCCTGGATAATTGAGAAGTCATCACATGATGGTTAT
ACCCTCGTATTATATTGTGAAGTACCTGATTTATTGAAATCATTGTGAGTAAGACCTTTT
TTAAATTCCAGTCTATTTTAAATCCAAATCTATGATGTATTCTGGGTGTCATTTAAAGAG
TGTATTACCCATAAATTACAATTGTTTTAGCAGAACGTTTTGGTGTAAAATTATTTGAAA
TCAAAATAAATCTATTTTTGTTTTTTCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAATTCCCCATTTTGTACAATATATCTTTGTAGTTTATTTAATTTTATTTATTTGTTT
ATTTTGGCCATTCGCAAGGCATGTGGAAGTTCCTGGGCCAGGGATGGAACCTGTGCCACA
GCAGTGACCTCAGCTGCTACAGTGATAATGCCAGGTCCTTAACTTGTTGCATCACAAGGG
AACTCCATCCTTGTAGGTTATTTTACACATAATGGTTTGTACCTCTTAATTCCCTTCCCC
TGTGTTCCCTCTCCCCACTGGTAACCATGAGTTCGTTCTCTGTATCGGTGAGTCTGTTTC
TTTTTTGTTATATTCCCCAGTTTATTGTATTTTTTAGATTGCTTAGATTTTTTTAATAAT
AGCTAAAACTAAAAACTTACAAATAAGGCAATTACAGTTCTTGTCATTGACAAAGAAAAA
TGTTATGTTTAATATGTGTGTGTATATAAAAAAGTTTTAGGAAGCAATACTTTATGTGTT
TATATTTTTTCTTCTAAGAGCCCAAGATCATTCATAAGTAACTCCTTATGCAAGAATTTA
GAACTACTTGCATCATAATTTCAGTCTTTATCTCCTTTATAATATGTAGTACTCATTGGA
TCTTTGTCCTGATGACATTGTGCTAAAGATGAAACTGTTGGGGAGAAGTATTTCTGATAA
TATTTCGGACAGAATTCAAGAAATGTTAAACTGAATTCTGAATTACAGTCGCGGGCGGAA
TGAGGAGCGACGCTGACTCAGGCCCCCACCGGCGGGCGCGAGTGTCCCGCCTCGCGTCCT
TCAGCGCGTCCCATCGGCTCCACAGCAAATCTCTCAGTAATGAAGAAAACTTGAAACTCT
TTGGGAAATGCAACAATCCAAATGGCCATGGGCACAATTATAAAGTTGTGGTGACAGTAC
ATGGAGAGATTGATCCTGTTACAGGAATGGTTATGAATTTGACTGATCTCAAAAAGTATA
TGGAGGAGGCAATCATGAAGCCCCTTGATCATAAGAATCTGGATCTGGATGTGCCATACT
TTGCAGATGTTGTAAGCACAACAGAAAATGTAGCTGTGTATATATGGGAAAACCTCCAGA
AATACCTTCCTGCGGGAGTTCTTTATAAAGTAAAAGTATATGAAACTGACAATAATATTG
TAGTCTATAAAGGAGAATAGCTCTTAGAGATTAATACCATAGAAAGGTTTAATTACTTTC
CATATTTGAAGACAATCTTTATTCCCCTGGATAATTGAGAAGTCATCACATGATGGTTAT
ACCCTCGTATTATATTGTGAAGTACCTGATTTATTGAAATCATTGTGAGTAAGACCTTTT
TTAAATTCCAGTCTATTTTAAATCCAAATCTATGATGTATTCTGGGTGTCATTTAAAGAG
TGTATTACCCATAAATTACAATTGTTTTAGCAGAACGTTTTGGTGTAAAATTATTTGAAA
TCAAAATAAATCTATTTTTGTTTTTTCAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61862798|ref|XP_583363.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862798|ref|XP_583363.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               158-361, gnl|bosTau2|chr24 (20861912-20862126)
               


               
               182-340, gnl|bosTau2|chr10 (22977652-22977816)
               


               
               431-708, gnl|bosTau2|chr15 (8022553-8022838)
               

               
               431-708, gnl|Hg17|chr11 (111608527-111608815)
               


               
               738-885, gnl|bosTau2|chr18 (43063214-43063357)
               

               
               738-885, gnl|Mm7|chr9 (50507203-50505454)
               


               
               1035-1466, gnl|bosTau2|chr15 (8023348-8023744)
               

               
               1035-1466, gnl|Hg17|chr11 (111609363-111609793)
               

               
               1035-1466, gnl|Mm7|chr9 (50500920-50500206)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-361, gnl|bosTau2|chr24 (20861912-20862126)
               


               
               182-340, gnl|bosTau2|chr10 (22977652-22977816)
               


               
               431-708, gnl|bosTau2|chr15 (8022553-8022838)
               

               
               431-708, gnl|Hg17|chr11 (111608527-111608815)
               


               
               738-885, gnl|bosTau2|chr18 (43063214-43063357)
               

               
               738-885, gnl|Mm7|chr9 (50507203-50505454)
               


               
               1035-1466, gnl|bosTau2|chr15 (8023348-8023744)
               

               
               1035-1466, gnl|Hg17|chr11 (111609363-111609793)
               

               
               1035-1466, gnl|Mm7|chr9 (50500920-50500206)

Expressed library(ies): 67 entry(ies)

More info

Expressed library(ies): 67 entry(ies)

Help | Less info


               
               bfe (2.8473)
               

               
               isp (2.25564)
               

               
               lin (1.89284)
               

               
               mgp (1.84544)
               

               
               tra (1.35401)
               

               
               lyg (1.33103)
               

               
               vin (1.33023)
               

               
               gul (1.24312)
               

               
               sme (1.22175)
               

               
               ldo (1.16403)
               

               
               thg (1.14112)
               

               
               ste (0.946458)
               

               
               fco (0.943248)
               

               
               sag (0.913576)
               

               
               spc (0.906927)
               

               
               mga (0.801025)
               

               
               aor (0.781097)
               

               
               ret (0.7724)
               

               
               tbr (0.770891)
               

               
               sto (0.719295)
               

               
               csk (0.562984)
               

               
               fce (0.543183)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               sug (0.509165)
               

               
               cbe (0.478469)
               

               
               liv (0.438853)
               

               
               che (0.408942)
               

               
               kid (0.389206)
               

               
               cbr (0.383926)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               ctl (0.306138)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

Expressed library(ies): 67 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (2.8473)
               

               
               isp (2.25564)
               

               
               lin (1.89284)
               

               
               mgp (1.84544)
               

               
               tra (1.35401)
               

               
               lyg (1.33103)
               

               
               vin (1.33023)
               

               
               gul (1.24312)
               

               
               sme (1.22175)
               

               
               ldo (1.16403)
               

               
               thg (1.14112)
               

               
               ste (0.946458)
               

               
               fco (0.943248)
               

               
               sag (0.913576)
               

               
               spc (0.906927)
               

               
               mga (0.801025)
               

               
               aor (0.781097)
               

               
               ret (0.7724)
               

               
               tbr (0.770891)
               

               
               sto (0.719295)
               

               
               csk (0.562984)
               

               
               fce (0.543183)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               sug (0.509165)
               

               
               cbe (0.478469)
               

               
               liv (0.438853)
               

               
               che (0.408942)
               

               
               kid (0.389206)
               

               
               cbr (0.383926)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               ctl (0.306138)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

	158-361, gnl\|bosTau2\|chr24 (20861912-20862126)

	182-340, gnl\|bosTau2\|chr10 (22977652-22977816)

	431-708, gnl\|bosTau2\|chr15 (8022553-8022838)
	431-708, gnl\|Hg17\|chr11 (111608527-111608815)

	738-885, gnl\|bosTau2\|chr18 (43063214-43063357)
	738-885, gnl\|Mm7\|chr9 (50507203-50505454)

	1035-1466, gnl\|bosTau2\|chr15 (8023348-8023744)
	1035-1466, gnl\|Hg17\|chr11 (111609363-111609793)
	1035-1466, gnl\|Mm7\|chr9 (50500920-50500206)

	bfe (2.8473)
	isp (2.25564)
	lin (1.89284)
	mgp (1.84544)
	tra (1.35401)
	lyg (1.33103)
	vin (1.33023)
	gul (1.24312)
	sme (1.22175)
	ldo (1.16403)
	thg (1.14112)
	ste (0.946458)
	fco (0.943248)
	sag (0.913576)
	spc (0.906927)
	mga (0.801025)
	aor (0.781097)
	ret (0.7724)
	tbr (0.770891)
	sto (0.719295)
	csk (0.562984)
	fce (0.543183)
	sin (0.524843)
	ova (0.516529)
	sug (0.509165)
	cbe (0.478469)
	liv (0.438853)
	che (0.408942)
	kid (0.389206)
	cbr (0.383926)
	bla (0.373042)
	mgm (0.360685)
	rec (0.346141)
	eye (0.341006)
	csp (0.322373)
	ctl (0.306138)
	cag (0.302389)
	ski (0.29347)
	cst (0.280073)
	ssp (0.271039)
	pgl (0.236967)
	ebs (0.236602)
	cbl (0.229595)
	mas (0.210305)
	tes (0.207814)
	fli (0.202881)
	jej (0.197844)
	fcc (0.197785)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	ill (0.175593)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	fat (0.147427)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	ute (0.132784)
	cty (0.10408)