Non-Coding RNA Search

Ss1.1-rspc005_a6.5

Sequence:


               
               TAGTGATCATGATGCCACCAACCGCGGCCAGTCAGCTGGTATGGATCTCTTCTCCAACTG
TACTGAGGAATGTAAAGCCCTGGGCCACTCAGATCGGTGCTGGATGCCTTCTTATGTCCC
TTCTGATGGACGTCAGGCTGCTGATTATCGTAGCAATCTGCATGTTCCTGGCATGGACTC
TGTTCCAGACACCGAGGTGTTTGAAACTCCAGAAGCCCAGCCTGGGGCGGAGAGGTCCTT
CTCCACCTTCGGCAAAGAGAAGGCCCTTCACAGCACCCTGGAGAGGAAGGAGCTGGATGG
ACTGCTGTCTAATACACGAGCGCCTTACAAACCACCATATTTGACACGGAAAAGGATATG
CTAGTCAATTCTACAGGACTTACCTGAAGCAGCATGATTTGCACAAAGTCGACCAACAAA
AGCATCAACTTTTCAACTCCATTATCTTGGCCATCCAGTTAGTTGTGTGTAACTGAGTAT
TAGATTGCCGGCGGAGTCATCAAGGCCAATTATAGGACCTAATTGCTCTCAGCAGGCCTG
AGAAATGAGTTGAAACGTGCAGAACTGTAGAAACTTTAGGCAACTGATTTTGCCTCTCCG
ATCAGTGTGTGCCTGTTTACAGCACTATATATCTTTCTCTCTCCAAATGTCACTGAGCCC
TTTAGATGTTTATATTCACCATGAGAAGCCAGTCATAAAGATAAAGGAAATTTGTGCATT
ATAAATGCAATATCACTGTTTTAAACTTGACTGTTTTATATTATTTTTGTGTGATCAAGT
GTTCCCCAAACTATTCCAACTTTACAAGAGAGATTGTGATTATGTTCTTTTCACCCGTGG
GTTATAAAAAATGTTGTATTCTAAAGACCCACAAAATATCAAAGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTGATCATGATGCCACCAACCGCGGCCAGTCAGCTGGTATGGATCTCTTCTCCAACTG
TACTGAGGAATGTAAAGCCCTGGGCCACTCAGATCGGTGCTGGATGCCTTCTTATGTCCC
TTCTGATGGACGTCAGGCTGCTGATTATCGTAGCAATCTGCATGTTCCTGGCATGGACTC
TGTTCCAGACACCGAGGTGTTTGAAACTCCAGAAGCCCAGCCTGGGGCGGAGAGGTCCTT
CTCCACCTTCGGCAAAGAGAAGGCCCTTCACAGCACCCTGGAGAGGAAGGAGCTGGATGG
ACTGCTGTCTAATACACGAGCGCCTTACAAACCACCATATTTGACACGGAAAAGGATATG
CTAGTCAATTCTACAGGACTTACCTGAAGCAGCATGATTTGCACAAAGTCGACCAACAAA
AGCATCAACTTTTCAACTCCATTATCTTGGCCATCCAGTTAGTTGTGTGTAACTGAGTAT
TAGATTGCCGGCGGAGTCATCAAGGCCAATTATAGGACCTAATTGCTCTCAGCAGGCCTG
AGAAATGAGTTGAAACGTGCAGAACTGTAGAAACTTTAGGCAACTGATTTTGCCTCTCCG
ATCAGTGTGTGCCTGTTTACAGCACTATATATCTTTCTCTCTCCAAATGTCACTGAGCCC
TTTAGATGTTTATATTCACCATGAGAAGCCAGTCATAAAGATAAAGGAAATTTGTGCATT
ATAAATGCAATATCACTGTTTTAAACTTGACTGTTTTATATTATTTTTGTGTGATCAAGT
GTTCCCCAAACTATTCCAACTTTACAAGAGAGATTGTGATTATGTTCTTTTCACCCGTGG
GTTATAAAAAATGTTGTATTCTAAAGACCCACAAAATATCAAAGACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839655|ref|XP_614079.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839655|ref|XP_614079.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-276, - strand, RNAz p=0.985508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-276, - strand, RNAz p=0.985508

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               38-344, gnl|bosTau2|chr12 (24819981-24819675)
               

               
               38-344, gnl|canFam2|chr19 (11718708-11718341)
               

               
               38-344, gnl|danRer3|chr14 (68209755-68210139)
               

               
               38-344, gnl|echTel1|scaffold_54868 (3309-2942)
               

               
               38-344, gnl|fr1|chrUn (187659489-187659061)
               

               
               38-344, gnl|galGal2|chr4 (27407400-27407769)
               

               
               38-344, gnl|hg17|chr4 (134441697-134442062)
               

               
               38-344, gnl|Hg17|chr4 (134441736-134442042)
               

               
               38-344, gnl|loxAfr1|scaffold_339 (34779-35148)
               

               
               38-344, gnl|mm7|chr3 (45335592-45335979)
               

               
               38-344, gnl|Mm7|chr3 (45335653-45335959)
               

               
               38-344, gnl|monDom2|scaffold_26 (41072815-41073181)
               

               
               38-344, gnl|oryCun1|scaffold_213358 (32213-31852)
               

               
               38-344, gnl|panTro1|chr3 (151425434-151425799)
               

               
               38-344, gnl|rheMac2|chr5 (125473101-125473466)
               

               
               38-344, gnl|rn3|chr2 (132853234-132853622)
               

               
               38-344, gnl|tetNig1|chrUn_random (131851862-131852262)
               

               
               38-344, gnl|xenTro1|scaffold_181 (1072262-1071869)
               


               
               345-888, gnl|bosTau2|chr12 (24792808-24792265)
               

               
               345-888, gnl|Hg17|chr4 (134468901-134469446)
               

               
               345-888, gnl|Mm7|chr3 (45362492-45363036)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-344, gnl|bosTau2|chr12 (24819981-24819675)
               

               
               38-344, gnl|canFam2|chr19 (11718708-11718341)
               

               
               38-344, gnl|danRer3|chr14 (68209755-68210139)
               

               
               38-344, gnl|echTel1|scaffold_54868 (3309-2942)
               

               
               38-344, gnl|fr1|chrUn (187659489-187659061)
               

               
               38-344, gnl|galGal2|chr4 (27407400-27407769)
               

               
               38-344, gnl|hg17|chr4 (134441697-134442062)
               

               
               38-344, gnl|Hg17|chr4 (134441736-134442042)
               

               
               38-344, gnl|loxAfr1|scaffold_339 (34779-35148)
               

               
               38-344, gnl|mm7|chr3 (45335592-45335979)
               

               
               38-344, gnl|Mm7|chr3 (45335653-45335959)
               

               
               38-344, gnl|monDom2|scaffold_26 (41072815-41073181)
               

               
               38-344, gnl|oryCun1|scaffold_213358 (32213-31852)
               

               
               38-344, gnl|panTro1|chr3 (151425434-151425799)
               

               
               38-344, gnl|rheMac2|chr5 (125473101-125473466)
               

               
               38-344, gnl|rn3|chr2 (132853234-132853622)
               

               
               38-344, gnl|tetNig1|chrUn_random (131851862-131852262)
               

               
               38-344, gnl|xenTro1|scaffold_181 (1072262-1071869)
               


               
               345-888, gnl|bosTau2|chr12 (24792808-24792265)
               

               
               345-888, gnl|Hg17|chr4 (134468901-134469446)
               

               
               345-888, gnl|Mm7|chr3 (45362492-45363036)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	38-344, gnl\|bosTau2\|chr12 (24819981-24819675)
	38-344, gnl\|canFam2\|chr19 (11718708-11718341)
	38-344, gnl\|danRer3\|chr14 (68209755-68210139)
	38-344, gnl\|echTel1\|scaffold_54868 (3309-2942)
	38-344, gnl\|fr1\|chrUn (187659489-187659061)
	38-344, gnl\|galGal2\|chr4 (27407400-27407769)
	38-344, gnl\|hg17\|chr4 (134441697-134442062)
	38-344, gnl\|Hg17\|chr4 (134441736-134442042)
	38-344, gnl\|loxAfr1\|scaffold_339 (34779-35148)
	38-344, gnl\|mm7\|chr3 (45335592-45335979)
	38-344, gnl\|Mm7\|chr3 (45335653-45335959)
	38-344, gnl\|monDom2\|scaffold_26 (41072815-41073181)
	38-344, gnl\|oryCun1\|scaffold_213358 (32213-31852)
	38-344, gnl\|panTro1\|chr3 (151425434-151425799)
	38-344, gnl\|rheMac2\|chr5 (125473101-125473466)
	38-344, gnl\|rn3\|chr2 (132853234-132853622)
	38-344, gnl\|tetNig1\|chrUn_random (131851862-131852262)
	38-344, gnl\|xenTro1\|scaffold_181 (1072262-1071869)

	345-888, gnl\|bosTau2\|chr12 (24792808-24792265)
	345-888, gnl\|Hg17\|chr4 (134468901-134469446)
	345-888, gnl\|Mm7\|chr3 (45362492-45363036)

	ece (0.229305)
	fco (0.157208)
	eli (0.151814)
	ret (0.128733)
	sug (0.127291)
	spc (0.113366)