Ss1.1-rspc005_e22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGCCGCCGCCGACGGTGTCGGAGAGTCTGCGCAGGGTGGCGAGCCCAGTCAGCCGGA GCCGCCGCCGCCCCAGCCGCCCCAGGAAGAGGCGGTGGCGTCCCCTATGGACGACGGGTT CCTGAGCCTGGACTCGCCCACCTATGTCCTGTACAGGGACAGAGCAGAATGGGCCGATAT AGATCCAGTGCCACAGAACGATGGTCCCAATCCAGTGGTCCAGATCATTTATAGTGAAAA ATTTAGAGATGTCTACGATTACTTCCGGGCCGTCCTGCAGCGCGATGAGAGAAGCGAGCG GGCGTTTAAACTGACCAGAGATGCCATTGAGTTAAATGCAGCCAATTACACAGTATGGCA TTTTCGAAGAGTTCTCCTTAAGTCACTTCAGAAGGATCTGCATGAGGAAATGAACTACAT CACAGCAATAATTGAGGAACAGCCCAAAAACTATCAAGTTTGGCATCACAGGCGCGTGCT GGTGGAGTGGCTGAAAGACCCATCTCAGGAGCTTGAGTTTATTGCCGACATTCTCAGTCA GGATGCCAAGAATTACCATGCCTGGCAGCATCGGCAGTGGGTCATCCAGGAATTTAAACT TTGGGATAATGAGCTACAGTATGTAGACCAGCTTCTCAAAGAGGATGTGAGAAATAACTC TGTCTGGAACCAAAGATACTTCGTAATTTCGAACACCACTGGCTACAATGATCCTGCTGT TTTGGAGAGAGAAGTCCAGTACACTCTAGAAATGATCAAACTAGTACCACATAATGAAAG TGCATGGAACTATTTGAAAGGGATTTTGCAGGATCGTGGTCTTTCCAAATATCCTAATCT CTTAAATCAATTACTTGATTTACAACCAAGTCACAGTTCCCCTTACCTAATTGCCTTTCT CGTGGATATCTATGAAGACATGCTAGAAAACCAATGTGACAACAAGGAGGACATTCTTAA TAAAGCATTAGAGTTATGTGAAATCCTAGCTAAAGAAAAGGACACTATAAGAAAGGAATA TTGGAGATACATTGGAAGATCTCTTCAGAGCAAACACAGCACAGAGAGTGACCCACCTAC AGATGTACAGCAATAACACCATCTAGAAGAACTTGATGGGATGCTTCTATTTTTTTAAGT GACTCTAATGCAGGAGTTAAGAACTAGAGTGATCATTCCCTTGGCCGGTGGTGTAAAACA TGCGTCCCACAGGTACTGCTTTTTAACACGAACTAGGTGTGATGCTTTTTGGGTGCTGCT GCGTTTCAGACTAGTTTAAGTAATTGGACTCTTTCTAAGCAAAGTAATTCTTTGGGAGGA GGGAGAAGAAACAAGGTCCTATAAAGGAACTTCTGTAGTCTTATCAACATTTACTCTAAT TCCCTAGCACCACCTCCTCCCTAAGTCGTGTATGTGTCAGGATCGGCAGCCTCAAGGATT GCACGAAACTTGAGTGTAAAGGATAGGAGGTAACTGAGAGCAGTTGTTCCTTTAGAGCTG CTGCATACGCCACACTCACAGTATCTCACCATCTCTGTAACCAACTAATGCCAAAAGAAT GGTTTTGTAATAAAATTATAAATGTATCCTAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGCCGCCGCCGACGGTGTCGGAGAGTCTGCGCAGGGTGGCGAGCCCAGTCAGCCGGA GCCGCCGCCGCCCCAGCCGCCCCAGGAAGAGGCGGTGGCGTCCCCTATGGACGACGGGTT CCTGAGCCTGGACTCGCCCACCTATGTCCTGTACAGGGACAGAGCAGAATGGGCCGATAT AGATCCAGTGCCACAGAACGATGGTCCCAATCCAGTGGTCCAGATCATTTATAGTGAAAA ATTTAGAGATGTCTACGATTACTTCCGGGCCGTCCTGCAGCGCGATGAGAGAAGCGAGCG GGCGTTTAAACTGACCAGAGATGCCATTGAGTTAAATGCAGCCAATTACACAGTATGGCA TTTTCGAAGAGTTCTCCTTAAGTCACTTCAGAAGGATCTGCATGAGGAAATGAACTACAT CACAGCAATAATTGAGGAACAGCCCAAAAACTATCAAGTTTGGCATCACAGGCGCGTGCT GGTGGAGTGGCTGAAAGACCCATCTCAGGAGCTTGAGTTTATTGCCGACATTCTCAGTCA GGATGCCAAGAATTACCATGCCTGGCAGCATCGGCAGTGGGTCATCCAGGAATTTAAACT TTGGGATAATGAGCTACAGTATGTAGACCAGCTTCTCAAAGAGGATGTGAGAAATAACTC TGTCTGGAACCAAAGATACTTCGTAATTTCGAACACCACTGGCTACAATGATCCTGCTGT TTTGGAGAGAGAAGTCCAGTACACTCTAGAAATGATCAAACTAGTACCACATAATGAAAG TGCATGGAACTATTTGAAAGGGATTTTGCAGGATCGTGGTCTTTCCAAATATCCTAATCT CTTAAATCAATTACTTGATTTACAACCAAGTCACAGTTCCCCTTACCTAATTGCCTTTCT CGTGGATATCTATGAAGACATGCTAGAAAACCAATGTGACAACAAGGAGGACATTCTTAA TAAAGCATTAGAGTTATGTGAAATCCTAGCTAAAGAAAAGGACACTATAAGAAAGGAATA TTGGAGATACATTGGAAGATCTCTTCAGAGCAAACACAGCACAGAGAGTGACCCACCTAC AGATGTACAGCAATAACACCATCTAGAAGAACTTGATGGGATGCTTCTATTTTTTTAAGT GACTCTAATGCAGGAGTTAAGAACTAGAGTGATCATTCCCTTGGCCGGTGGTGTAAAACA TGCGTCCCACAGGTACTGCTTTTTAACACGAACTAGGTGTGATGCTTTTTGGGTGCTGCT GCGTTTCAGACTAGTTTAAGTAATTGGACTCTTTCTAAGCAAAGTAATTCTTTGGGAGGA GGGAGAAGAAACAAGGTCCTATAAAGGAACTTCTGTAGTCTTATCAACATTTACTCTAAT TCCCTAGCACCACCTCCTCCCTAAGTCGTGTATGTGTCAGGATCGGCAGCCTCAAGGATT GCACGAAACTTGAGTGTAAAGGATAGGAGGTAACTGAGAGCAGTTGTTCCTTTAGAGCTG CTGCATACGCCACACTCACAGTATCTCACCATCTCTGTAACCAACTAATGCCAAAAGAAT GGTTTTGTAATAAAATTATAAATGTATCCTAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 623-740, - strand, RNAz p=0.618179 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 623-740, - strand, RNAz p=0.618179 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 357-463, gnl|bosTau2|chr27 (24183497-24183603) | |
| 357-463, gnl|canFam2|chr16 (25705888-25705751) | |
| 357-463, gnl|danRer3|chr1 (5918568-5918426) | |
| 357-463, gnl|dasNov1|scaffold_106594 (2563-2459) | |
| 357-463, gnl|echTel1|scaffold_289875 (5000-4832) | |
| 357-463, gnl|fr1|chrUn (129797840-129797699) | |
| 357-463, gnl|galGal2|chrZ (25702641-25702504) | |
| 357-463, gnl|hg17|chr8 (43043824-43043995) | |
| 357-463, gnl|Hg17|chr8 (43043854-43043960) | |
| 357-463, gnl|loxAfr1|scaffold_17743 (12563-12705) | |
| 357-463, gnl|mm7|chr8 (24766292-24766150) | |
| 357-463, gnl|Mm7|chr8 (24766259-24766153) | |
| 357-463, gnl|monDom2|scaffold_1 (78894668-78894526) | |
| 357-463, gnl|oryCun1|scaffold_179094 (39461-39312) | |
| 357-463, gnl|panTro1|chr7_random (24484304-24484475) | |
| 357-463, gnl|rheMac2|chr14 (84524434-84524536) | |
| 357-463, gnl|rn3|chr16 (70448228-70448371) | |
| 357-463, gnl|tetNig1|chr1 (9520930-9520831) | |
| 357-463, gnl|xenTro1|scaffold_267 (749443-749564) | |
| 588-740, gnl|bosTau2|chr27 (24189864-24190016) | |
| 588-740, gnl|canFam2|chr16 (25701110-25700954) | |
| 588-740, gnl|danRer3|chr1 (5923874-5923718) | |
| 588-740, gnl|dasNov1|scaffold_160799 (4023-4179) | |
| 588-740, gnl|echTel1|scaffold_285959 (3248-3092) | |
| 588-740, gnl|fr1|chrUn (129797363-129797207) | |
| 588-740, gnl|galGal2|chrZ (25700067-25699911) | |
| 588-740, gnl|hg17|chr8 (43051515-43051671) | |
| 588-740, gnl|Hg17|chr8 (43051514-43051666) | |
| 588-740, gnl|loxAfr1|scaffold_71501 (4909-5060) | |
| 588-740, gnl|mm7|chr8 (24761056-24760900) | |
| 588-740, gnl|Mm7|chr8 (24761055-24760903) | |
| 588-740, gnl|monDom2|scaffold_1 (78886530-78886374) | |
| 588-740, gnl|oryCun1|scaffold_181011 (3904-4051) | |
| 588-740, gnl|panTro1|chr7_random (24493306-24493462) | |
| 588-740, gnl|rheMac2|chr8 (43683206-43683362) | |
| 588-740, gnl|rn3|chr16 (70452996-70453152) | |
| 588-740, gnl|tetNig1|chr1 (9520588-9520432) | |
| 588-740, gnl|xenTro1|scaffold_267 (751278-751434) | |
| 972-1597, gnl|bosTau2|chr27 (24193152-24193787) | |
| 972-1597, gnl|Hg17|chr8 (43059458-43060088) | |
| 972-1597, gnl|Mm7|chr8 (24756055-24755455) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 357-463, gnl|bosTau2|chr27 (24183497-24183603) | |
| 357-463, gnl|canFam2|chr16 (25705888-25705751) | |
| 357-463, gnl|danRer3|chr1 (5918568-5918426) | |
| 357-463, gnl|dasNov1|scaffold_106594 (2563-2459) | |
| 357-463, gnl|echTel1|scaffold_289875 (5000-4832) | |
| 357-463, gnl|fr1|chrUn (129797840-129797699) | |
| 357-463, gnl|galGal2|chrZ (25702641-25702504) | |
| 357-463, gnl|hg17|chr8 (43043824-43043995) | |
| 357-463, gnl|Hg17|chr8 (43043854-43043960) | |
| 357-463, gnl|loxAfr1|scaffold_17743 (12563-12705) | |
| 357-463, gnl|mm7|chr8 (24766292-24766150) | |
| 357-463, gnl|Mm7|chr8 (24766259-24766153) | |
| 357-463, gnl|monDom2|scaffold_1 (78894668-78894526) | |
| 357-463, gnl|oryCun1|scaffold_179094 (39461-39312) | |
| 357-463, gnl|panTro1|chr7_random (24484304-24484475) | |
| 357-463, gnl|rheMac2|chr14 (84524434-84524536) | |
| 357-463, gnl|rn3|chr16 (70448228-70448371) | |
| 357-463, gnl|tetNig1|chr1 (9520930-9520831) | |
| 357-463, gnl|xenTro1|scaffold_267 (749443-749564) | |
| 588-740, gnl|bosTau2|chr27 (24189864-24190016) | |
| 588-740, gnl|canFam2|chr16 (25701110-25700954) | |
| 588-740, gnl|danRer3|chr1 (5923874-5923718) | |
| 588-740, gnl|dasNov1|scaffold_160799 (4023-4179) | |
| 588-740, gnl|echTel1|scaffold_285959 (3248-3092) | |
| 588-740, gnl|fr1|chrUn (129797363-129797207) | |
| 588-740, gnl|galGal2|chrZ (25700067-25699911) | |
| 588-740, gnl|hg17|chr8 (43051515-43051671) | |
| 588-740, gnl|Hg17|chr8 (43051514-43051666) | |
| 588-740, gnl|loxAfr1|scaffold_71501 (4909-5060) | |
| 588-740, gnl|mm7|chr8 (24761056-24760900) | |
| 588-740, gnl|Mm7|chr8 (24761055-24760903) | |
| 588-740, gnl|monDom2|scaffold_1 (78886530-78886374) | |
| 588-740, gnl|oryCun1|scaffold_181011 (3904-4051) | |
| 588-740, gnl|panTro1|chr7_random (24493306-24493462) | |
| 588-740, gnl|rheMac2|chr8 (43683206-43683362) | |
| 588-740, gnl|rn3|chr16 (70452996-70453152) | |
| 588-740, gnl|tetNig1|chr1 (9520588-9520432) | |
| 588-740, gnl|xenTro1|scaffold_267 (751278-751434) | |
| 972-1597, gnl|bosTau2|chr27 (24193152-24193787) | |
| 972-1597, gnl|Hg17|chr8 (43059458-43060088) | |
| 972-1597, gnl|Mm7|chr8 (24756055-24755455) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| pro (1.02407) | |
| hea (0.408998) | |
| spl (0.286369) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| pty (0.142714) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.02407) | |
| hea (0.408998) | |
| spl (0.286369) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| pty (0.142714) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |