Non-Coding RNA Search

Ss1.1-rspc005_f13.5

Sequence:


               
               TGTAATCTTGTAATCTTAATAAGGGCATTATGAGAAGATGACTCCATTTTTTTTAATATT
TCAAACACATTGGGATGTACTAATGAATGTCAGCTGTAGGAATGGTGGTTTCGTTTTAAG
GAATAAGCGTGTTGGGGGAAGATGATGAAAATGTACTACTGAACGTTTTACACTTCCATA
GGCAAGTGGGGTTATGTGTTGAAGCATAATCCGCATGCTTCGTAAACTGACCGAAATTGT
AGAAATTACACCTAGGAGCTGAATTATGCCAAATGGCTATTTTCCTTTAAAAAAGAGATT
TGGGGGTAGTGGTGAGGGAATTGACCCTTAAGACTACTTCTGAATAGTATTTTGGAATTG
AAGACTTGGTGACCAGCACAGAACATCAGAGTTGGGTATTTCAGTGTGCCAAGTTCGGGT
GAACTAGGTTTGCCTCTTTCATAACAATGTAAACACAATGGTGTAGTTCATTAAATTCTG
GGTGGATGGGAGCGGGACTGATTACTGTGTCTTGCCCTTCGCCCTGTGTTTTTTTCAGAA
CCAAATAACAGAAATGTATACGTGTGTACTGTATCTGCCTCTTCACCACATTTTTATGAC
ACTGTATTCCACTGCCTGCTTTTTTAAATTTTTTAACCTTCTTTCCCTAGGATTTGTCCT
GTATCTTAGCATTTGTGGTTAACAGTGATACTAGGGCTGACCGCACATAAGAAGTCACAA
GAGAAGAGCGGAAGGGCAAGAATTCAAAGCATTTGTTCATACCATGTGGCGACCTCTTTT
GCATAGTCGCGTAGGATCCTGTTTGTAATGCTATCATAAATATTCTGTAGTTTTGTTTCT
CCCTCCCCCAACTGGAGCTATGAAACATTTTATTGGATTCAGTCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAATCTTGTAATCTTAATAAGGGCATTATGAGAAGATGACTCCATTTTTTTTAATATT
TCAAACACATTGGGATGTACTAATGAATGTCAGCTGTAGGAATGGTGGTTTCGTTTTAAG
GAATAAGCGTGTTGGGGGAAGATGATGAAAATGTACTACTGAACGTTTTACACTTCCATA
GGCAAGTGGGGTTATGTGTTGAAGCATAATCCGCATGCTTCGTAAACTGACCGAAATTGT
AGAAATTACACCTAGGAGCTGAATTATGCCAAATGGCTATTTTCCTTTAAAAAAGAGATT
TGGGGGTAGTGGTGAGGGAATTGACCCTTAAGACTACTTCTGAATAGTATTTTGGAATTG
AAGACTTGGTGACCAGCACAGAACATCAGAGTTGGGTATTTCAGTGTGCCAAGTTCGGGT
GAACTAGGTTTGCCTCTTTCATAACAATGTAAACACAATGGTGTAGTTCATTAAATTCTG
GGTGGATGGGAGCGGGACTGATTACTGTGTCTTGCCCTTCGCCCTGTGTTTTTTTCAGAA
CCAAATAACAGAAATGTATACGTGTGTACTGTATCTGCCTCTTCACCACATTTTTATGAC
ACTGTATTCCACTGCCTGCTTTTTTAAATTTTTTAACCTTCTTTCCCTAGGATTTGTCCT
GTATCTTAGCATTTGTGGTTAACAGTGATACTAGGGCTGACCGCACATAAGAAGTCACAA
GAGAAGAGCGGAAGGGCAAGAATTCAAAGCATTTGTTCATACCATGTGGCGACCTCTTTT
GCATAGTCGCGTAGGATCCTGTTTGTAATGCTATCATAAATATTCTGTAGTTTTGTTTCT
CCCTCCCCCAACTGGAGCTATGAAACATTTTATTGGATTCAGTCTTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               111-388, + strand, RNAz p=0.997596

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-388, + strand, RNAz p=0.997596

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               286-432, + strand, RNAmicro p=0.999901

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               286-432, + strand, RNAmicro p=0.999901

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-888, gnl|bosTau2|chr3 (61235906-61235020)
               

               
               1-888, gnl|Hg17|chr5 (172497787-172498664)
               

               
               1-888, gnl|Mm7|chr17 (24960472-24961323)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr3 (61235906-61235020)
               

               
               1-888, gnl|Hg17|chr5 (172497787-172498664)
               

               
               1-888, gnl|Mm7|chr17 (24960472-24961323)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-888, gnl\|bosTau2\|chr3 (61235906-61235020)
	1-888, gnl\|Hg17\|chr5 (172497787-172498664)
	1-888, gnl\|Mm7\|chr17 (24960472-24961323)