Non-Coding RNA Search

Ss1.1-rspc005_g5.5

Sequence:


               
               AAGTTTCGCAAGATTTGAAAACCAAGTTTCTGTAGCTTCGCTATCTAAGACAGACCACCG
TGATCTTGCAACAGAGAGAAACGGGGGAAAACTGCTTAGCAGCCAAAAGCAGAGGGGGGA
AAAAAAATGCTCTTTTCAGCAGACGTCTTCAGGTGGGGGAGGGAGGGGCCAGGGGATGTT
TCCTGGCATCATTGACATGTCCTCAGCCCCTTACCTAGAAGACCGTGTTGTGACAACGGG
TGCCTGGTTGATGTTTTTTTGTTTGTTTTTTAAGGGAAACCATGTATGAAACTGTTACCA
CATCCTACCCCGAAGGGGAAGCGAGGTAAAAGGAACAGAGGGCTCGGGAGAAAAAAAGCC
ATGTCTCCCATTTGCCTCAGATTGCAAAATCCAGACTGGGCATTGTATTTGGAATCACAA
ACATAGACTTCTTACTGTGTTGGGTCAAGTAAAATTAATTTGCAGTTTTGATTTTCATCG
ATGAGCTGTACTTTCCCCCATGATTGTATGTAGTTTTAATAAAATCATTTAGAGCAAGTG
GGTACCAACTGATGTTGCAGAATCTTTTGTCAGGCACTCTCCTCCAAGAGGCCAATAAGT
CATTTTAAAATGTATGTCAGAGATGTAAACAAACATTTTGGATTTTTTTAAACGGTATTT
ATTTGGAATGTTTTCATTTATCTAAATAACTATTGCTATTATGAATTATGGAAACAAAGA
TTACTATCATGTGTGGCATATAGTGACTTAACACACACATCACGCAATCTGCAAACCCAG
AAAATGTGTATATCTGTCTTTAGAAATTAGTGTTTATATCACTTACAGTGGTTTGTGAAT
AAAGAAAACTGGTTTGTAATATCAAAAAATAAAAGCTTAGTCTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTTCGCAAGATTTGAAAACCAAGTTTCTGTAGCTTCGCTATCTAAGACAGACCACCG
TGATCTTGCAACAGAGAGAAACGGGGGAAAACTGCTTAGCAGCCAAAAGCAGAGGGGGGA
AAAAAAATGCTCTTTTCAGCAGACGTCTTCAGGTGGGGGAGGGAGGGGCCAGGGGATGTT
TCCTGGCATCATTGACATGTCCTCAGCCCCTTACCTAGAAGACCGTGTTGTGACAACGGG
TGCCTGGTTGATGTTTTTTTGTTTGTTTTTTAAGGGAAACCATGTATGAAACTGTTACCA
CATCCTACCCCGAAGGGGAAGCGAGGTAAAAGGAACAGAGGGCTCGGGAGAAAAAAAGCC
ATGTCTCCCATTTGCCTCAGATTGCAAAATCCAGACTGGGCATTGTATTTGGAATCACAA
ACATAGACTTCTTACTGTGTTGGGTCAAGTAAAATTAATTTGCAGTTTTGATTTTCATCG
ATGAGCTGTACTTTCCCCCATGATTGTATGTAGTTTTAATAAAATCATTTAGAGCAAGTG
GGTACCAACTGATGTTGCAGAATCTTTTGTCAGGCACTCTCCTCCAAGAGGCCAATAAGT
CATTTTAAAATGTATGTCAGAGATGTAAACAAACATTTTGGATTTTTTTAAACGGTATTT
ATTTGGAATGTTTTCATTTATCTAAATAACTATTGCTATTATGAATTATGGAAACAAAGA
TTACTATCATGTGTGGCATATAGTGACTTAACACACACATCACGCAATCTGCAAACCCAG
AAAATGTGTATATCTGTCTTTAGAAATTAGTGTTTATATCACTTACAGTGGTTTGTGAAT
AAAGAAAACTGGTTTGTAATATCAAAAAATAAAAGCTTAGTCTGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               261-376, + strand, RNAz p=0.750407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-376, + strand, RNAz p=0.750407

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-888, gnl|bosTau2|chr25 (6203050-6203841)
               

               
               73-888, gnl|Hg17|chr16 (7702567-7703339)
               

               
               73-888, gnl|Mm7|chr16 (7084935-7085718)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-888, gnl|bosTau2|chr25 (6203050-6203841)
               

               
               73-888, gnl|Hg17|chr16 (7702567-7703339)
               

               
               73-888, gnl|Mm7|chr16 (7084935-7085718)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	73-888, gnl\|bosTau2\|chr25 (6203050-6203841)
	73-888, gnl\|Hg17\|chr16 (7702567-7703339)
	73-888, gnl\|Mm7\|chr16 (7084935-7085718)

	fco (0.314416)
	cbe (0.239234)
	ece (0.229305)
	nms (0.213858)
	fhi (0.169578)
	tbr (0.154178)
	ssp (0.13552)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)
	ldo (0.0970026)