Non-Coding RNA Search

Ss1.1-rspc005_h19.5

Sequence:


               
               GTCGGCGTGAGTGGCGTGTGGCGTCTAAGTTTCTGCGCTTTCTCAGGTAAAATATGGCTA
AAAGTTTACGGAGTAAGTGGAAAAGGAAAATGCGTGCTGAAAAGAGAAAAAAGAATGCCC
CAAAGGAGCTGAGCAGACTTAAAAATATTCTTAAAATAGGTGGTGATGTTTTAATGAAAG
ATGTTCAAGAAATAGCAACCGTGGTGGAACCTAAACGTTGTCAAGAGAAAACCCAATGTG
TGGAGAAAGATGAAACAGATGACATGAAAATGGAAACTGATATTAAGAGAAACAAAAAGA
CTCTTTTAGACCAGCATGGACAGTACCCCATATGGATGAACCAGAGGCAAAGAAAAAGGC
TGAAGGCAAAGCGAGAGAAAAAGAAGGGAAAAAGCAAAGCAAAAGCCTTGAAGGCAGCGA
AGGGTTTGGCCTGGTAGACTTAAAAACATGAAAAATGCCACGTGGGACAGATCTTTGATT
AGAATGTATACATTGATTTCAGCTTCCATCAAATGAAAACTGTTTCGTTTTTTAACTTGG
CCTTTTTCTTCAGTTCAAACCCAACATAACTCCTCAAGTTTGTTTTGGTAACTTGAATAA
AATATTTTCTTTGATGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGCGTGAGTGGCGTGTGGCGTCTAAGTTTCTGCGCTTTCTCAGGTAAAATATGGCTA
AAAGTTTACGGAGTAAGTGGAAAAGGAAAATGCGTGCTGAAAAGAGAAAAAAGAATGCCC
CAAAGGAGCTGAGCAGACTTAAAAATATTCTTAAAATAGGTGGTGATGTTTTAATGAAAG
ATGTTCAAGAAATAGCAACCGTGGTGGAACCTAAACGTTGTCAAGAGAAAACCCAATGTG
TGGAGAAAGATGAAACAGATGACATGAAAATGGAAACTGATATTAAGAGAAACAAAAAGA
CTCTTTTAGACCAGCATGGACAGTACCCCATATGGATGAACCAGAGGCAAAGAAAAAGGC
TGAAGGCAAAGCGAGAGAAAAAGAAGGGAAAAAGCAAAGCAAAAGCCTTGAAGGCAGCGA
AGGGTTTGGCCTGGTAGACTTAAAAACATGAAAAATGCCACGTGGGACAGATCTTTGATT
AGAATGTATACATTGATTTCAGCTTCCATCAAATGAAAACTGTTTCGTTTTTTAACTTGG
CCTTTTTCTTCAGTTCAAACCCAACATAACTCCTCAAGTTTGTTTTGGTAACTTGAATAA
AATATTTTCTTTGATGAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BRT6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BRT6_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-636, gnl|bosTau2|chr18 (55016407-55015783)
               

               
               5-636, gnl|Hg17|chr22 (40397644-40397022)
               

               
               5-636, gnl|Mm7|chrX (11651767-11651053)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-636, gnl|bosTau2|chr18 (55016407-55015783)
               

               
               5-636, gnl|Hg17|chr22 (40397644-40397022)
               

               
               5-636, gnl|Mm7|chrX (11651767-11651053)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               spc (0.566829)
               

               
               csk (0.562984)
               

               
               ste (0.540833)
               

               
               nms (0.427716)
               

               
               thg (0.380373)
               

               
               ldo (0.291008)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.566829)
               

               
               csk (0.562984)
               

               
               ste (0.540833)
               

               
               nms (0.427716)
               

               
               thg (0.380373)
               

               
               ldo (0.291008)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	5-636, gnl\|bosTau2\|chr18 (55016407-55015783)
	5-636, gnl\|Hg17\|chr22 (40397644-40397022)
	5-636, gnl\|Mm7\|chrX (11651767-11651053)

	spc (0.566829)
	csk (0.562984)
	ste (0.540833)
	nms (0.427716)
	thg (0.380373)
	ldo (0.291008)
	ova (0.258264)
	bla (0.248694)
	tra (0.246184)
	pan (0.23596)
	ece (0.229305)
	aor (0.195274)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	fco (0.157208)
	eli (0.151814)
	nca (0.136874)
	ute (0.132784)
	ecc (0.115035)
	eje (0.0988338)