Ss1.1-rspc005_i3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTATTTTTTGTTTACATTTATCTTCAGAGTTCCCATCATGGCTCAGCAGTTAACGAACCC AACTAGTATCCATGAGGATGTAGGTTCGATTCCTGCCATTGCAGTGGGTTGAGTATCCGA CGTTGCTGTGAGCTGTAGTATAAGTCTCAGACTTGGCTTGGATCCGGAGTTGCTCTGGTG TAGGCTGGCAGCTACATCGCCAACTCAACCACTAGCCTAGGAACCTCCATATGCTGCAAG TGTGACCCTAAAAAGAGACACACACACACACACAGAAAAAAAAAATTCATTTTCAGTTGT CACGTATTTGTTTTTACAGTTTATGTTTATTGTACTTAAAAATATTTTCTTGGTCATTTA TGAAGACAGATCTGTGTGTTGTTTAGTTAATATATGCAGAACGCATTGTATAAGATGTAG ATAATAGAAGGTTCCTTTCAGTGGGCTCTTTTAAATGAATGACTCCTTATGGAAATGCTG GACATTCTCAGTTTCTTTAAGTGATTTTGTCTTCAACTTTAATGTTTAACTGTATCTTTG GACCTCGAGCCACTGCTAAAGGTACGGTCCTGCATTGCAGTTATGGTGGACGTGATGGAG TTGCCCAAATCGCGCATCAACGCCAGCATGGTAACTCAGTTCATCGACCAGCCGGTCTGC TTCGTAGGGAGGCTGGAGAAGATTCATCCCACTGGAAAAATGTTTATTCTTTCAGATGGA GAAGGAAAAAATGTAACCATTGAGTTGATGGAGCCTCTTGATGAAGAAATCTCTGGAATC GTGGAAGTGGTTGGAAGAGTCACAGGCAAAGCAACCATTATGTGTGTCTCTTACATCCAG TTTAAAGAAGATAACCATCCTTTTGATCTTGGACTTTATAATGAAGCTGTGAAAATTATC CATGAGTTCCCTCAGTATTTTCCTTTGGGTGTTGTGCAGCATGGTTGAACCTGATGAATT TTATGATTGCAAATAAACTACATTGAAGACTATTAATGGAGGCCCCTGATACTTGAGGAA GAGATTCTTGTGATTTTTTTTAATGTTTAAAACATTTCTTTAAATTTTTAAAGAAAAAGT TCAATTTCATTAGCCTAACTTTATCTGATCTTCCAGTATGTCATTTTTGATGGAACTGGA ATATTGACACTTCTCACCTAGTCTTTGTAAAGAATCACATCTCTGGCATATGGTCAGATT AGATGCAAGAATGAAGCAGTTGGCTGAGTTTTAGTTTTCTATTATTAATAAAAGTGTAAA AGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTATTTTTTGTTTACATTTATCTTCAGAGTTCCCATCATGGCTCAGCAGTTAACGAACCC AACTAGTATCCATGAGGATGTAGGTTCGATTCCTGCCATTGCAGTGGGTTGAGTATCCGA CGTTGCTGTGAGCTGTAGTATAAGTCTCAGACTTGGCTTGGATCCGGAGTTGCTCTGGTG TAGGCTGGCAGCTACATCGCCAACTCAACCACTAGCCTAGGAACCTCCATATGCTGCAAG TGTGACCCTAAAAAGAGACACACACACACACACAGAAAAAAAAAATTCATTTTCAGTTGT CACGTATTTGTTTTTACAGTTTATGTTTATTGTACTTAAAAATATTTTCTTGGTCATTTA TGAAGACAGATCTGTGTGTTGTTTAGTTAATATATGCAGAACGCATTGTATAAGATGTAG ATAATAGAAGGTTCCTTTCAGTGGGCTCTTTTAAATGAATGACTCCTTATGGAAATGCTG GACATTCTCAGTTTCTTTAAGTGATTTTGTCTTCAACTTTAATGTTTAACTGTATCTTTG GACCTCGAGCCACTGCTAAAGGTACGGTCCTGCATTGCAGTTATGGTGGACGTGATGGAG TTGCCCAAATCGCGCATCAACGCCAGCATGGTAACTCAGTTCATCGACCAGCCGGTCTGC TTCGTAGGGAGGCTGGAGAAGATTCATCCCACTGGAAAAATGTTTATTCTTTCAGATGGA GAAGGAAAAAATGTAACCATTGAGTTGATGGAGCCTCTTGATGAAGAAATCTCTGGAATC GTGGAAGTGGTTGGAAGAGTCACAGGCAAAGCAACCATTATGTGTGTCTCTTACATCCAG TTTAAAGAAGATAACCATCCTTTTGATCTTGGACTTTATAATGAAGCTGTGAAAATTATC CATGAGTTCCCTCAGTATTTTCCTTTGGGTGTTGTGCAGCATGGTTGAACCTGATGAATT TTATGATTGCAAATAAACTACATTGAAGACTATTAATGGAGGCCCCTGATACTTGAGGAA GAGATTCTTGTGATTTTTTTTAATGTTTAAAACATTTCTTTAAATTTTTAAAGAAAAAGT TCAATTTCATTAGCCTAACTTTATCTGATCTTCCAGTATGTCATTTTTGATGGAACTGGA ATATTGACACTTCTCACCTAGTCTTTGTAAAGAATCACATCTCTGGCATATGGTCAGATT AGATGCAAGAATGAAGCAGTTGGCTGAGTTTTAGTTTTCTATTATTAATAAAAGTGTAAA AGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 285-563, gnl|bosTau2|chr4 (3482135-3482401) | |
| 285-563, gnl|Hg17|chr7 (7451289-7451041) | |
| 285-563, gnl|Mm7|chr6 (8215535-8215263) | |
| 571-681, gnl|bosTau2|chr4 (3480473-3480583) | |
| 571-681, gnl|canFam2|chr11 (5897085-5896976) | |
| 571-681, gnl|canFam2|chr11 (5897086-5896976) | |
| 571-681, gnl|canFam2|chr14 (26182840-26183398) | |
| 571-681, gnl|dasNov1|scaffold_136397 (3539-3652) | |
| 571-681, gnl|dasNov1|scaffold_24738 (46814-46700) | |
| 571-681, gnl|dasNov1|scaffold_3064 (69894-69318) | |
| 571-681, gnl|echTel1|scaffold_212898 (10112-10216) | |
| 571-681, gnl|echTel1|scaffold_212898 (10112-10216) | |
| 571-681, gnl|echTel1|scaffold_323025 (30208-29754) | |
| 571-681, gnl|hg17|chr2 (175192156-175192284) | |
| 571-681, gnl|hg17|chr6 (53351244-53351356) | |
| 571-681, gnl|hg17|chr7 (7452936-7453474) | |
| 571-681, gnl|Hg17|chr7 (7453301-7453191) | |
| 571-681, gnl|loxAfr1|scaffold_8285 (36103-36216) | |
| 571-681, gnl|loxAfr1|scaffold_8285 (36490-35936) | |
| 571-681, gnl|loxAfr1|scaffold_8285 (36103-36216) | |
| 571-681, gnl|mm7|chr1 (9945297-9945183) | |
| 571-681, gnl|mm7|chr1 (9945283-9945183) | |
| 571-681, gnl|mm7|chr6 (8217016-8217540) | |
| 571-681, gnl|Mm7|chr6 (8217375-8217264) | |
| 571-681, gnl|oryCun1|scaffold_182699 (25052-24948) | |
| 571-681, gnl|oryCun1|scaffold_182699 (24687-25206) | |
| 571-681, gnl|oryCun1|scaffold_182699 (25046-24948) | |
| 571-681, gnl|panTro1|chr13 (64829748-64829876) | |
| 571-681, gnl|panTro1|chr5 (54379154-54379266) | |
| 571-681, gnl|panTro1|chr6 (7914779-7915298) | |
| 571-681, gnl|rheMac2|chr12 (38115196-38115324) | |
| 571-681, gnl|rheMac2|chr3 (118748950-118748384) | |
| 571-681, gnl|rheMac2|chr4 (52978657-52978769) | |
| 571-681, gnl|rn3|chr12 (45917717-45917614) | |
| 571-681, gnl|rn3|chr12 (45917714-45917614) | |
| 571-681, gnl|rn3|chr4 (33425529-33426045) | |
| 858-1253, gnl|bosTau2|chr4 (3483288-3483659) | |
| 858-1253, gnl|Hg17|chr7 (7449961-7449604) | |
| 858-1253, gnl|Mm7|chr6 (8214519-8214207) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 285-563, gnl|bosTau2|chr4 (3482135-3482401) | |
| 285-563, gnl|Hg17|chr7 (7451289-7451041) | |
| 285-563, gnl|Mm7|chr6 (8215535-8215263) | |
| 571-681, gnl|bosTau2|chr4 (3480473-3480583) | |
| 571-681, gnl|canFam2|chr11 (5897085-5896976) | |
| 571-681, gnl|canFam2|chr11 (5897086-5896976) | |
| 571-681, gnl|canFam2|chr14 (26182840-26183398) | |
| 571-681, gnl|dasNov1|scaffold_136397 (3539-3652) | |
| 571-681, gnl|dasNov1|scaffold_24738 (46814-46700) | |
| 571-681, gnl|dasNov1|scaffold_3064 (69894-69318) | |
| 571-681, gnl|echTel1|scaffold_212898 (10112-10216) | |
| 571-681, gnl|echTel1|scaffold_212898 (10112-10216) | |
| 571-681, gnl|echTel1|scaffold_323025 (30208-29754) | |
| 571-681, gnl|hg17|chr2 (175192156-175192284) | |
| 571-681, gnl|hg17|chr6 (53351244-53351356) | |
| 571-681, gnl|hg17|chr7 (7452936-7453474) | |
| 571-681, gnl|Hg17|chr7 (7453301-7453191) | |
| 571-681, gnl|loxAfr1|scaffold_8285 (36103-36216) | |
| 571-681, gnl|loxAfr1|scaffold_8285 (36490-35936) | |
| 571-681, gnl|loxAfr1|scaffold_8285 (36103-36216) | |
| 571-681, gnl|mm7|chr1 (9945297-9945183) | |
| 571-681, gnl|mm7|chr1 (9945283-9945183) | |
| 571-681, gnl|mm7|chr6 (8217016-8217540) | |
| 571-681, gnl|Mm7|chr6 (8217375-8217264) | |
| 571-681, gnl|oryCun1|scaffold_182699 (25052-24948) | |
| 571-681, gnl|oryCun1|scaffold_182699 (24687-25206) | |
| 571-681, gnl|oryCun1|scaffold_182699 (25046-24948) | |
| 571-681, gnl|panTro1|chr13 (64829748-64829876) | |
| 571-681, gnl|panTro1|chr5 (54379154-54379266) | |
| 571-681, gnl|panTro1|chr6 (7914779-7915298) | |
| 571-681, gnl|rheMac2|chr12 (38115196-38115324) | |
| 571-681, gnl|rheMac2|chr3 (118748950-118748384) | |
| 571-681, gnl|rheMac2|chr4 (52978657-52978769) | |
| 571-681, gnl|rn3|chr12 (45917717-45917614) | |
| 571-681, gnl|rn3|chr12 (45917714-45917614) | |
| 571-681, gnl|rn3|chr4 (33425529-33426045) | |
| 858-1253, gnl|bosTau2|chr4 (3483288-3483659) | |
| 858-1253, gnl|Hg17|chr7 (7449961-7449604) | |
| 858-1253, gnl|Mm7|chr6 (8214519-8214207) |
| Expressed library(ies): 54 entry(ies) | More info |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
| thg (3.29656) | |
| fty (1.23088) | |
| cbe (1.19617) | |
| fco (1.10046) | |
| ret (0.7724) | |
| spl (0.715922) | |
| tra (0.61546) | |
| lun (0.601956) | |
| pgl (0.592417) | |
| mgm (0.541028) | |
| cbr (0.511902) | |
| isp (0.451128) | |
| fat (0.442282) | |
| fcc (0.39557) | |
| aor (0.390549) | |
| kid (0.389206) | |
| elu (0.385356) | |
| sin (0.349895) | |
| med (0.348756) | |
| duo (0.345602) | |
| mga (0.32041) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| sug (0.254582) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| bla (0.124347) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (3.29656) | |
| fty (1.23088) | |
| cbe (1.19617) | |
| fco (1.10046) | |
| ret (0.7724) | |
| spl (0.715922) | |
| tra (0.61546) | |
| lun (0.601956) | |
| pgl (0.592417) | |
| mgm (0.541028) | |
| cbr (0.511902) | |
| isp (0.451128) | |
| fat (0.442282) | |
| fcc (0.39557) | |
| aor (0.390549) | |
| kid (0.389206) | |
| elu (0.385356) | |
| sin (0.349895) | |
| med (0.348756) | |
| duo (0.345602) | |
| mga (0.32041) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| sug (0.254582) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| bla (0.124347) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |