Non-Coding RNA Search

Ss1.1-rspc005_j19.5

Sequence:


               
               CGGGGAGATGCTTCCCTAATCCTCTCGGATGACTACTTGGAGCCATAAGTAACCTCAGCA
AAAAAAAAAACGATGCCTCAGCAAGCCACTTCTCCACGACAAGCATCCACCCAGGCCTCA
GGCATGTTTCTGCCTCCACTCCACGGGATGGACAGGGCGCCGGCGGGCAAGCGGAACGGC
CCAAGTACAAGCGATCGCCCCATCTCCTTGGTTTGAAGCTTTACCCATGTATCATGTTCC
TGTAGCCATTTTTATTTTTTAAGAAACTTCTGATACTTTCTCCCTAACGGAGGCCCTGAA
CCCCCAGAGAGCTACATGTCTGCTCCCTCGGCCTGACCCATCCAGATAGGGCGACGTCGG
CAGCAGCGACTCAAGGGACGTGTGTACATATGTAAATGAGAAATAGAGACATGTTAACAG
ATGCATTCATTTCCCTTGGAATGTGTATTGTTTTTATTTTACGGAACAAAACAAAACAAA
CAAACAAAAAAAGGCTTGGAACTCCATCTTGACGTGGAAAAACTAGATGCTGTCTGTTAG
CGTATGTGAGGTCTCCCTCCGCATCTGTCTCACTCATGTAATATACTCTGACTCTGTGTG
GAAAGGAATTTTTGTTCCGTTTTGTTTTTTATTTTATCTACATGTACTATTTAGCTTCAG
TGTACTAGTCCTGCCACCTGTGTATTTTTAGGGTGCTATGGAAATAATGAAAAGAAACGG
GGATTTCAGAAGAAAATTGTAACCAAATTCATACTTTGTATAATTTTTGATATCATGATC
GCAGGTGATCCACACGTACACACACGAACACGCCCACCGTGCAGCCTGAAGTTACTCCCA
CGGCGACCGTCATCGTCTTTGTACATCTCTGTACAATGCAATCATTTCATACTTTAAACT
GGTCAGAAAACTAATTGTGATTTCTAGTCTTGCAAAGCTGTATGTAGTTAGATGATGTGA
CAACCTCTAATATTTATCTAATAAATATGTATTCAGATGAAACCTGTATATTAGGTGTTC
ATGTGGTTATTTTGTATTTAAAGATCAAATTATTTGACTATTGCTAGACATTTCTATACT
CTGTTGTAACACTGAGGTATCTCATTTGCCCATGTTAATTTTTTTCTAAATAAATGGACA
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGAGATGCTTCCCTAATCCTCTCGGATGACTACTTGGAGCCATAAGTAACCTCAGCA
AAAAAAAAAACGATGCCTCAGCAAGCCACTTCTCCACGACAAGCATCCACCCAGGCCTCA
GGCATGTTTCTGCCTCCACTCCACGGGATGGACAGGGCGCCGGCGGGCAAGCGGAACGGC
CCAAGTACAAGCGATCGCCCCATCTCCTTGGTTTGAAGCTTTACCCATGTATCATGTTCC
TGTAGCCATTTTTATTTTTTAAGAAACTTCTGATACTTTCTCCCTAACGGAGGCCCTGAA
CCCCCAGAGAGCTACATGTCTGCTCCCTCGGCCTGACCCATCCAGATAGGGCGACGTCGG
CAGCAGCGACTCAAGGGACGTGTGTACATATGTAAATGAGAAATAGAGACATGTTAACAG
ATGCATTCATTTCCCTTGGAATGTGTATTGTTTTTATTTTACGGAACAAAACAAAACAAA
CAAACAAAAAAAGGCTTGGAACTCCATCTTGACGTGGAAAAACTAGATGCTGTCTGTTAG
CGTATGTGAGGTCTCCCTCCGCATCTGTCTCACTCATGTAATATACTCTGACTCTGTGTG
GAAAGGAATTTTTGTTCCGTTTTGTTTTTTATTTTATCTACATGTACTATTTAGCTTCAG
TGTACTAGTCCTGCCACCTGTGTATTTTTAGGGTGCTATGGAAATAATGAAAAGAAACGG
GGATTTCAGAAGAAAATTGTAACCAAATTCATACTTTGTATAATTTTTGATATCATGATC
GCAGGTGATCCACACGTACACACACGAACACGCCCACCGTGCAGCCTGAAGTTACTCCCA
CGGCGACCGTCATCGTCTTTGTACATCTCTGTACAATGCAATCATTTCATACTTTAAACT
GGTCAGAAAACTAATTGTGATTTCTAGTCTTGCAAAGCTGTATGTAGTTAGATGATGTGA
CAACCTCTAATATTTATCTAATAAATATGTATTCAGATGAAACCTGTATATTAGGTGTTC
ATGTGGTTATTTTGTATTTAAAGATCAAATTATTTGACTATTGCTAGACATTTCTATACT
CTGTTGTAACACTGAGGTATCTCATTTGCCCATGTTAATTTTTTTCTAAATAAATGGACA
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               954-1073, + strand, RNAz p=0.678193

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               954-1073, + strand, RNAz p=0.678193

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1012-1103, + strand, RNAmicro p=0.943435

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1012-1103, + strand, RNAmicro p=0.943435

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020338, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020338, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1144, gnl|bosTau2|chr28 (27876592-27877717)
               

               
               1-1144, gnl|Hg17|chr10 (80745142-80746278)
               

               
               1-1144, gnl|Mm7|chr14 (23336795-23337925)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1144, gnl|bosTau2|chr28 (27876592-27877717)
               

               
               1-1144, gnl|Hg17|chr10 (80745142-80746278)
               

               
               1-1144, gnl|Mm7|chr14 (23336795-23337925)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

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               cbe (1.91388)
               

               
               lin (0.582411)
               

               
               cmu (0.55918)
               

               
               gul (0.532765)
               

               
               ecc (0.46014)
               

               
               fat (0.442282)
               

               
               bla (0.373042)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.91388)
               

               
               lin (0.582411)
               

               
               cmu (0.55918)
               

               
               gul (0.532765)
               

               
               ecc (0.46014)
               

               
               fat (0.442282)
               

               
               bla (0.373042)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

	1-1144, gnl\|bosTau2\|chr28 (27876592-27877717)
	1-1144, gnl\|Hg17\|chr10 (80745142-80746278)
	1-1144, gnl\|Mm7\|chr14 (23336795-23337925)

	cbe (1.91388)
	lin (0.582411)
	cmu (0.55918)
	gul (0.532765)
	ecc (0.46014)
	fat (0.442282)
	bla (0.373042)
	sin (0.349895)
	eye (0.341006)
	vin (0.332557)
	mga (0.32041)
	isp (0.300752)
	liv (0.292569)
	fce (0.271592)
	lyg (0.266205)
	ret (0.257467)
	tra (0.246184)
	pgl (0.236967)
	pan (0.23596)
	spc (0.226732)
	tes (0.207814)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	rec (0.17307)
	mcp (0.170648)
	fco (0.157208)
	bfe (0.149858)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	ste (0.135208)
	ute (0.132784)
	sug (0.127291)
	eep (0.122564)
	clu (0.119646)
	ebs (0.118301)