Ss1.1-rspc005_k12.5.5
|
CCGCGGAGCGGGCTGCGTCAGGTGGCTGGCCCGGCGCGGCTCGCTCGCTCGCTCGCTGGC
CCCGCCGCCGCCGCCATGGGCTGTCTCGGAAACAGTAAGACCGAGGACCAGCGCAACGAG
GAGAAGGCGCAGCAGCGCGAGGCCAACAAAAAGATCGAGAAGCAGCTGCAGAAGGACAAG
CAGGTCTACCGGGCCACGCACCGCCTGCTGCTGCTGGGTGCTGGAGAATCTGGTAAAAGC
ACCATTGTGAAGCAGATGAGGATCCTGCATGTTAATGGGTTTAATGGAGATGAGAAGGCC
ACCAAAGTGCAGGACATCAAGAACAACCTGAAAGAGGCCATTGAAACCATCGTGGCTGCC
ATGAGCAACCTGGTGCCTCCAGTGGAGCTGGCCAACCCTGAGAACCAGTTCAGAGTGGAC
TACATCCTGAGCGTGATGAACGTGCCTGACTTTGACTTCCCTCCCGAGTTCTACGAGCAT
GCCAAGGCTCTGTGGGAGGACGAGGGCGTGCGCGCCTGCTACGAGCGCTCCAACGAGTAC
CAGCTCATCGACTGCGCCCAGTACTTCCTGGACAAGATTGACGTCATCAAGCAGGCTGAC
TACGTGCCCAGCGACCAGGACCTGCTCCGCTGCCGCGTCCTGACTTCTGGAATCTTTGAG
ACCAAGTTCCAGGTGGACAAAGTCAACTTCCACATGTTTGACGTCGGTGGCCAGCGTGAC
GAGCGCCGCAAATGGATCCAATGCTTCAATGACGTGACCGCCATCATTTTCGTGGTCGCC
AGCAGCAGCTACAACATGGTCATTCGGGAGGACAACCAGACCAACCGCCTGCAGGAGGCC
CTGAACCTCTTCAAGAGCATCTGGAACAACAGATGGCTGCGCACCATCTCTGTGATTCTG
TTCCTCAACAAGCAAGATCTGCTGGCTGAGAAAGTCCTCGCTGGAAAATCGAAGATTGAG
GACTACTTTCCAGAATTTGCTCGCTACACTACTCCTGAGGATGCAACTCCCGAGCCCGGA
GAGGACCCACGCGTGACCCGGGCCAAGTACTTCATTCGAGATGAATTTCTGAGAATCAGC
ACTGCTAGTGGAGACGGGCGCCACTACTGCTACCCTCACTTCACCTGCGCTGTGGACACT
GAGAACATCCGCCGTGTGTTCAACGACTGCCGAGACATCATCCAGCGCATGCACCTCCGT
CAGTACGAGCTGCTCTAAGAAGGGAACCTCTAAATTTAATTAAGGCCTTAAGCACAATTA
ATTAAACGTGAAATGTAATTGTACACGCGGTTGATCACCCACCATAGGGCCTGATTAACA
AAGCAACCTTTCCTGTCCCTCAAGTGATTTTGCGAAACCCCCTTTACCCTTCCGCTTGCT
TAAATATTCCAAATTTAGAAAGCTTAAGGCGGCCTACAGAAAAAGAATTTAAAAAAAGGC
CACAAACGTTCCCTCTCTCTTTAAGTAACTAAAATAATAGCAGCAAACAGAAATAAAGAA
ATAAAATAAAAGAAATAAATGAAATAAATGAAACAAATGAAACAAATGAAATAAATATTG
TGTTGTGCAGCATTAAAAAAAATTCAAAATAAAAATTAAAAGTGAGCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCGGAGCGGGCTGCGTCAGGTGGCTGGCCCGGCGCGGCTCGCTCGCTCGCTCGCTGGC
CCCGCCGCCGCCGCCATGGGCTGTCTCGGAAACAGTAAGACCGAGGACCAGCGCAACGAG
GAGAAGGCGCAGCAGCGCGAGGCCAACAAAAAGATCGAGAAGCAGCTGCAGAAGGACAAG
CAGGTCTACCGGGCCACGCACCGCCTGCTGCTGCTGGGTGCTGGAGAATCTGGTAAAAGC
ACCATTGTGAAGCAGATGAGGATCCTGCATGTTAATGGGTTTAATGGAGATGAGAAGGCC
ACCAAAGTGCAGGACATCAAGAACAACCTGAAAGAGGCCATTGAAACCATCGTGGCTGCC
ATGAGCAACCTGGTGCCTCCAGTGGAGCTGGCCAACCCTGAGAACCAGTTCAGAGTGGAC
TACATCCTGAGCGTGATGAACGTGCCTGACTTTGACTTCCCTCCCGAGTTCTACGAGCAT
GCCAAGGCTCTGTGGGAGGACGAGGGCGTGCGCGCCTGCTACGAGCGCTCCAACGAGTAC
CAGCTCATCGACTGCGCCCAGTACTTCCTGGACAAGATTGACGTCATCAAGCAGGCTGAC
TACGTGCCCAGCGACCAGGACCTGCTCCGCTGCCGCGTCCTGACTTCTGGAATCTTTGAG
ACCAAGTTCCAGGTGGACAAAGTCAACTTCCACATGTTTGACGTCGGTGGCCAGCGTGAC
GAGCGCCGCAAATGGATCCAATGCTTCAATGACGTGACCGCCATCATTTTCGTGGTCGCC
AGCAGCAGCTACAACATGGTCATTCGGGAGGACAACCAGACCAACCGCCTGCAGGAGGCC
CTGAACCTCTTCAAGAGCATCTGGAACAACAGATGGCTGCGCACCATCTCTGTGATTCTG
TTCCTCAACAAGCAAGATCTGCTGGCTGAGAAAGTCCTCGCTGGAAAATCGAAGATTGAG
GACTACTTTCCAGAATTTGCTCGCTACACTACTCCTGAGGATGCAACTCCCGAGCCCGGA
GAGGACCCACGCGTGACCCGGGCCAAGTACTTCATTCGAGATGAATTTCTGAGAATCAGC
ACTGCTAGTGGAGACGGGCGCCACTACTGCTACCCTCACTTCACCTGCGCTGTGGACACT
GAGAACATCCGCCGTGTGTTCAACGACTGCCGAGACATCATCCAGCGCATGCACCTCCGT
CAGTACGAGCTGCTCTAAGAAGGGAACCTCTAAATTTAATTAAGGCCTTAAGCACAATTA
ATTAAACGTGAAATGTAATTGTACACGCGGTTGATCACCCACCATAGGGCCTGATTAACA
AAGCAACCTTTCCTGTCCCTCAAGTGATTTTGCGAAACCCCCTTTACCCTTCCGCTTGCT
TAAATATTCCAAATTTAGAAAGCTTAAGGCGGCCTACAGAAAAAGAATTTAAAAAAAGGC
CACAAACGTTCCCTCTCTCTTTAAGTAACTAAAATAATAGCAGCAAACAGAAATAAAGAA
ATAAAATAAAAGAAATAAATGAAATAAATGAAACAAATGAAACAAATGAAATAAATATTG
TGTTGTGCAGCATTAAAAAAAATTCAAAATAAAAATTAAAAGTGAGCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|57208704|emb|CAI42548.1| |
Protein identifier
|
gi|57208704|emb|CAI42548.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
70-219, gnl|bosTau2|chr24 (31603773-31603922) |
|
70-219, gnl|Hg17|chr18 (11742427-11742579) |
|
70-219, gnl|Mm7|chr18 (67526115-67526267) |
| |
|
341-466, gnl|bosTau2|chr13 (37849319-37849194) |
|
341-466, gnl|Hg17|chr20 (56912117-56912242) |
|
341-466, gnl|Mm7|chr2 (174086199-174086324) |
| |
|
871-1003, gnl|bosTau2|chr13 (37843568-37843436) |
|
871-1003, gnl|Hg17|chr20 (56918399-56918531) |
|
871-1003, gnl|Mm7|chr2 (174090041-174090173) |
| |
|
1071-1529, gnl|bosTau2|chr13 (37842929-37842469) |
|
1071-1529, gnl|canFam2|chr24 (46639018-46638631) |
|
1071-1529, gnl|dasNov1|scaffold_10009 (8770-8425) |
|
1071-1529, gnl|echTel1|scaffold_293869 (4926-4604) |
|
1071-1529, gnl|hg17|chr11 (129153653-129153943) |
|
1071-1529, gnl|Hg17|chr20 (56919132-56919586) |
|
1071-1529, gnl|loxAfr1|scaffold_33557 (2201-2545) |
|
1071-1529, gnl|mm7|chr2 (174091116-174090763) |
|
1071-1529, gnl|Mm7|chr2 (174090635-174091088) |
|
1071-1529, gnl|oryCun1|scaffold_180839 (7394-7057) |
|
1071-1529, gnl|rheMac2|chr10 (5619565-5619921) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
70-219, gnl|bosTau2|chr24 (31603773-31603922) |
|
70-219, gnl|Hg17|chr18 (11742427-11742579) |
|
70-219, gnl|Mm7|chr18 (67526115-67526267) |
| |
|
341-466, gnl|bosTau2|chr13 (37849319-37849194) |
|
341-466, gnl|Hg17|chr20 (56912117-56912242) |
|
341-466, gnl|Mm7|chr2 (174086199-174086324) |
| |
|
871-1003, gnl|bosTau2|chr13 (37843568-37843436) |
|
871-1003, gnl|Hg17|chr20 (56918399-56918531) |
|
871-1003, gnl|Mm7|chr2 (174090041-174090173) |
| |
|
1071-1529, gnl|bosTau2|chr13 (37842929-37842469) |
|
1071-1529, gnl|canFam2|chr24 (46639018-46638631) |
|
1071-1529, gnl|dasNov1|scaffold_10009 (8770-8425) |
|
1071-1529, gnl|echTel1|scaffold_293869 (4926-4604) |
|
1071-1529, gnl|hg17|chr11 (129153653-129153943) |
|
1071-1529, gnl|Hg17|chr20 (56919132-56919586) |
|
1071-1529, gnl|loxAfr1|scaffold_33557 (2201-2545) |
|
1071-1529, gnl|mm7|chr2 (174091116-174090763) |
|
1071-1529, gnl|Mm7|chr2 (174090635-174091088) |
|
1071-1529, gnl|oryCun1|scaffold_180839 (7394-7057) |
|
1071-1529, gnl|rheMac2|chr10 (5619565-5619921) |
|
cbe (8.61244) |
|
fco (5.34507) |
|
spc (4.87473) |
|
sto (4.13595) |
|
sug (3.94603) |
|
che (3.27154) |
|
tbr (3.23774) |
|
pgl (3.08057) |
|
isp (3.00752) |
|
amn (2.92398) |
|
thg (2.66261) |
|
fat (2.65369) |
|
fhi (2.54367) |
|
gul (2.30865) |
|
ski (2.20103) |
|
cbl (2.18115) |
|
pro (2.04813) |
|
hyp (1.99971) |
|
bla (1.98955) |
|
cty (1.97752) |
|
csk (1.97044) |
|
ova (1.93698) |
|
fbs (1.92881) |
|
fce (1.90114) |
|
ece (1.83444) |
|
sme (1.83262) |
|
kid (1.81629) |
|
bfe (1.79829) |
|
lyg (1.73033) |
|
spl (1.71821) |
|
vin (1.66279) |
|
ste (1.6225) |
|
mgp (1.61476) |
|
rec (1.55763) |
|
hea (1.43149) |
|
tra (1.35401) |
|
cje (1.32188) |
|
cmu (1.30475) |
|
sag (1.27901) |
|
ssp (1.21968) |
|
eye (1.19352) |
|
fcc (1.18671) |
|
aor (1.17165) |
|
lin (1.16482) |
|
cki (1.15664) |
|
elu (1.15607) |
|
ecc (1.15035) |
|
jca (1.1396) |
|
ese (1.13852) |
|
csp (1.1283) |
|
cst (1.12029) |
|
nmm (1.06242) |
|
cag (1.05836) |
|
liv (1.02399) |
|
cut (1.01954) |
|
hlv (0.974795) |
|
eru (0.960384) |
|
sin (0.874738) |
|
pty (0.856287) |
|
nms (0.855432) |
|
ebs (0.828108) |
|
ldo (0.776021) |
|
mgm (0.721371) |
|
mcp (0.682594) |
|
pla (0.66836) |
|
cov (0.660764) |
|
ret (0.643666) |
|
mga (0.64082) |
|
lun (0.601956) |
|
nlu (0.575043) |
|
ute (0.531138) |
|
cly (0.482567) |
|
clu (0.478583) |
|
med (0.465008) |
|
tes (0.415628) |
|
eje (0.395335) |
|
col (0.390016) |
|
cbr (0.383926) |
|
nep (0.36785) |
|
duo (0.345602) |
|
nje (0.33184) |
|
nco (0.323468) |
|
eli (0.303628) |
|
cte (0.29274) |
|
cga (0.279096) |
|
nca (0.273748) |
|
eep (0.245128) |
|
mas (0.210305) |
|
fli (0.202881) |
|
fty (0.17584) |
|
ton (0.1755) |
|
cli (0.152812) |
|
lnt (0.142308) |
|
nbm (0.0993246) |
|
cbe (8.61244) |
|
fco (5.34507) |
|
spc (4.87473) |
|
sto (4.13595) |
|
sug (3.94603) |
|
che (3.27154) |
|
tbr (3.23774) |
|
pgl (3.08057) |
|
isp (3.00752) |
|
amn (2.92398) |
|
thg (2.66261) |
|
fat (2.65369) |
|
fhi (2.54367) |
|
gul (2.30865) |
|
ski (2.20103) |
|
cbl (2.18115) |
|
pro (2.04813) |
|
hyp (1.99971) |
|
bla (1.98955) |
|
cty (1.97752) |
|
csk (1.97044) |
|
ova (1.93698) |
|
fbs (1.92881) |
|
fce (1.90114) |
|
ece (1.83444) |
|
sme (1.83262) |
|
kid (1.81629) |
|
bfe (1.79829) |
|
lyg (1.73033) |
|
spl (1.71821) |
|
vin (1.66279) |
|
ste (1.6225) |
|
mgp (1.61476) |
|
rec (1.55763) |
|
hea (1.43149) |
|
tra (1.35401) |
|
cje (1.32188) |
|
cmu (1.30475) |
|
sag (1.27901) |
|
ssp (1.21968) |
|
eye (1.19352) |
|
fcc (1.18671) |
|
aor (1.17165) |
|
lin (1.16482) |
|
cki (1.15664) |
|
elu (1.15607) |
|
ecc (1.15035) |
|
jca (1.1396) |
|
ese (1.13852) |
|
csp (1.1283) |
|
cst (1.12029) |
|
nmm (1.06242) |
|
cag (1.05836) |
|
liv (1.02399) |
|
cut (1.01954) |
|
hlv (0.974795) |
|
eru (0.960384) |
|
sin (0.874738) |
|
pty (0.856287) |
|
nms (0.855432) |
|
ebs (0.828108) |
|
ldo (0.776021) |
|
mgm (0.721371) |
|
mcp (0.682594) |
|
pla (0.66836) |
|
cov (0.660764) |
|
ret (0.643666) |
|
mga (0.64082) |
|
lun (0.601956) |
|
nlu (0.575043) |
|
ute (0.531138) |
|
cly (0.482567) |
|
clu (0.478583) |
|
med (0.465008) |
|
tes (0.415628) |
|
eje (0.395335) |
|
col (0.390016) |
|
cbr (0.383926) |
|
nep (0.36785) |
|
duo (0.345602) |
|
nje (0.33184) |
|
nco (0.323468) |
|
eli (0.303628) |
|
cte (0.29274) |
|
cga (0.279096) |
|
nca (0.273748) |
|
eep (0.245128) |
|
mas (0.210305) |
|
fli (0.202881) |
|
fty (0.17584) |
|
ton (0.1755) |
|
cli (0.152812) |
|
lnt (0.142308) |
|
nbm (0.0993246) |
