Ss1.1-rspc005_m16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGGCCCTGGTGAGCGGACGGGAGTGCAGGCGCGGGGCCATGAGGTCCCTGGAGCTAC CCCGGCTCCCGCTGCTGCTGCTTCTGCTGCTGCCGCAGGGCCCCGCTGGCGGCGCAGCGC GATTCGACCCCACCTGGGAGTCCCTGGACGCTCGCCAGTTGCCCGGCTGGTTCGACCAGG CGAAGTTCGGCATCTTCGTCCACTGGGGCGTGTTCTCCGTGCCCAGTTTTGGGAGCGAAT GGTTCTGGTGGTATTGGCAAAAGGAAAAGATTCCAAAGTATGTGGACTTCATGAAAAATA ATTACCCTCCTGATTTCACATATGCAGATTTTGGACCACAATTTACAGCCAAATTTTTTG ATGCGAACCAGTGGGCAGATATTTTACAGGCTTCTGGTGCCAAATACATTGTCTTAACTT CCAAACACCATGAAGGCTTCACCTTGTGGGGCTCCAAGTACTCGTGGAACTGGAATGCTG CAGATGAGGGGCCGAAGAGGGACATTGTCAAGGAACTTGCAGTGGCCATTAGGAACAGGA CTGACCTGCGTTTTGGGCTGTACTATTCCCTTTTTGAATGGTTTCATCCACTCTTCCTTG AGGACGAATCCAGGTTATTCCAGACACAACAGTTTCCAGTGTCTAAGATGCTGCCTGAGC TTTATGAGTTAGTGAACACATATCAGCCTGAGATCCTCTGGTCAGACGGTGATGGAGGGG CCCCAGACACCTATTGGAACAGCACAGGCTTCTTAGCCTGGCTCTATAATGAAAGCCCAG TTCGGGACACAGTGGTCACCAATGACCGCTGGGGAGCTGGTAGCATCTGTAAGCATGGTG GCTACTATACCTGCAGTGATCGTTATAATCCAGGATACCTTTTGCTGCATAAATGGGAAA ACTGCATGACAATAGACAAGTTTTCCTGGGGCTATAGGAGGAATGCTGGAATCTCTGACT ATCTTACAATTGAAGAATTGGTGAAGCAACTTGTAGAAACAGTTTCATGTGGAGGAAATC TCTTGATGAATATTGGGCCCACAAAAGATGGCATCATTTCTCCCATTTTCGAGGAGCGAT TAAGGCAGATGGGGACCTGGCTAAAAGTCAACGGAGAAGCTATCTATGAAACCCGTGCTT GGAGATCCCAGAATGACACTGTCACTCCAGATGTGTGGTATACATCCAAACCTAAAAGCA ATTTGGTCTATGCTCTGTTTCTCAAGTGGCCCACATCAGGACAGCTGCTTCTTGATCAGC CCAAAGCTACTCTGGGGGCAACAGAGGTTAAACTACTGGGACATGGACAGCCACTTAACT GGACTTCTTTGGAGCCAAAGGGCATCACGGTGGAACTGCCTCATCTAACCTTTCATCAGA TGCCCTGTGAATGGGGCTGGGCTCTAGCACTAAGTAATGTGACCTAATTTGCAGCAGAGT GCTTCCTGCTGCAGTTCTGTCTAAGACGAGAATATATCACATTTCTATAATTGTAGCACA TGGAGAAAGCAAATGTAAAATTCGCCAAGAATTTCCTAAATTACCCACATAACTGTTTTA AGTGCACTTTGCTATTGACATCTCTTCACACTGAATTTATTTCCAAGTGTGATTCAGAGG TAGGGGGTTTTGTTTCTGAGTAGCTAGGAATTGGTGGTGGTAAGGACTGAATGGTGTCTT CTGCGAAATTCACATGTTGATGCCCTAACCCCCAATGTGACTGTATTTGGAGATTTTTTA AAGAAGTAGCTAAGGTTAAATGAAGTCATAACAGTGGGACCTTCATCCAACATGACTGGT GTCCTTATAAGACAAGGAGGAGCAGGGATGCAGGCACACAGATGAAAACATGATATATGG ATGCACTGAGAAGGTGGCCATCTGCTAACCAAGGAGAAAGGCTCAAGAGAAACGACGTCT GCTGACACCTCGGGCTTTCAGCCTCTAGAACTGTGAGAAAATAAATTACTGTTGTTTAAG CCAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGGCCCTGGTGAGCGGACGGGAGTGCAGGCGCGGGGCCATGAGGTCCCTGGAGCTAC CCCGGCTCCCGCTGCTGCTGCTTCTGCTGCTGCCGCAGGGCCCCGCTGGCGGCGCAGCGC GATTCGACCCCACCTGGGAGTCCCTGGACGCTCGCCAGTTGCCCGGCTGGTTCGACCAGG CGAAGTTCGGCATCTTCGTCCACTGGGGCGTGTTCTCCGTGCCCAGTTTTGGGAGCGAAT GGTTCTGGTGGTATTGGCAAAAGGAAAAGATTCCAAAGTATGTGGACTTCATGAAAAATA ATTACCCTCCTGATTTCACATATGCAGATTTTGGACCACAATTTACAGCCAAATTTTTTG ATGCGAACCAGTGGGCAGATATTTTACAGGCTTCTGGTGCCAAATACATTGTCTTAACTT CCAAACACCATGAAGGCTTCACCTTGTGGGGCTCCAAGTACTCGTGGAACTGGAATGCTG CAGATGAGGGGCCGAAGAGGGACATTGTCAAGGAACTTGCAGTGGCCATTAGGAACAGGA CTGACCTGCGTTTTGGGCTGTACTATTCCCTTTTTGAATGGTTTCATCCACTCTTCCTTG AGGACGAATCCAGGTTATTCCAGACACAACAGTTTCCAGTGTCTAAGATGCTGCCTGAGC TTTATGAGTTAGTGAACACATATCAGCCTGAGATCCTCTGGTCAGACGGTGATGGAGGGG CCCCAGACACCTATTGGAACAGCACAGGCTTCTTAGCCTGGCTCTATAATGAAAGCCCAG TTCGGGACACAGTGGTCACCAATGACCGCTGGGGAGCTGGTAGCATCTGTAAGCATGGTG GCTACTATACCTGCAGTGATCGTTATAATCCAGGATACCTTTTGCTGCATAAATGGGAAA ACTGCATGACAATAGACAAGTTTTCCTGGGGCTATAGGAGGAATGCTGGAATCTCTGACT ATCTTACAATTGAAGAATTGGTGAAGCAACTTGTAGAAACAGTTTCATGTGGAGGAAATC TCTTGATGAATATTGGGCCCACAAAAGATGGCATCATTTCTCCCATTTTCGAGGAGCGAT TAAGGCAGATGGGGACCTGGCTAAAAGTCAACGGAGAAGCTATCTATGAAACCCGTGCTT GGAGATCCCAGAATGACACTGTCACTCCAGATGTGTGGTATACATCCAAACCTAAAAGCA ATTTGGTCTATGCTCTGTTTCTCAAGTGGCCCACATCAGGACAGCTGCTTCTTGATCAGC CCAAAGCTACTCTGGGGGCAACAGAGGTTAAACTACTGGGACATGGACAGCCACTTAACT GGACTTCTTTGGAGCCAAAGGGCATCACGGTGGAACTGCCTCATCTAACCTTTCATCAGA TGCCCTGTGAATGGGGCTGGGCTCTAGCACTAAGTAATGTGACCTAATTTGCAGCAGAGT GCTTCCTGCTGCAGTTCTGTCTAAGACGAGAATATATCACATTTCTATAATTGTAGCACA TGGAGAAAGCAAATGTAAAATTCGCCAAGAATTTCCTAAATTACCCACATAACTGTTTTA AGTGCACTTTGCTATTGACATCTCTTCACACTGAATTTATTTCCAAGTGTGATTCAGAGG TAGGGGGTTTTGTTTCTGAGTAGCTAGGAATTGGTGGTGGTAAGGACTGAATGGTGTCTT CTGCGAAATTCACATGTTGATGCCCTAACCCCCAATGTGACTGTATTTGGAGATTTTTTA AAGAAGTAGCTAAGGTTAAATGAAGTCATAACAGTGGGACCTTCATCCAACATGACTGGT GTCCTTATAAGACAAGGAGGAGCAGGGATGCAGGCACACAGATGAAAACATGATATATGG ATGCACTGAGAAGGTGGCCATCTGCTAACCAAGGAGAAAGGCTCAAGAGAAACGACGTCT GCTGACACCTCGGGCTTTCAGCCTCTAGAACTGTGAGAAAATAAATTACTGTTGTTTAAG CCAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 4-250, gnl|bosTau2|chr9 (48190379-48190638) | |
| 4-250, gnl|Hg17|chr6 (143874509-143874238) | |
| 4-250, gnl|Mm7|chr10 (13201455-13201733) | |
| 434-775, gnl|bosTau2|chr9 (48202260-48202601) | |
| 434-775, gnl|Hg17|chr6 (143867084-143866743) | |
| 434-775, gnl|Mm7|chr10 (13206094-13206435) | |
| 984-1180, gnl|bosTau2|chr9 (48204596-48204792) | |
| 984-1180, gnl|canFam2|chr1 (38079176-38079366) | |
| 984-1180, gnl|danRer3|chr17 (3860904-3861094) | |
| 984-1180, gnl|dasNov1|scaffold_168347 (676-866) | |
| 984-1180, gnl|echTel1|scaffold_180212 (1313-1123) | |
| 984-1180, gnl|fr1|chrUn (2582475-2582285) | |
| 984-1180, gnl|galGal2|chr3 (51383270-51383081) | |
| 984-1180, gnl|hg17|chr6 (143864757-143864947) | |
| 984-1180, gnl|Hg17|chr6 (143864955-143864742) | |
| 984-1180, gnl|loxAfr1|scaffold_10525 (49598-49433) | |
| 984-1180, gnl|mm7|chr10 (13207789-13207599) | |
| 984-1180, gnl|Mm7|chr10 (13207589-13207785) | |
| 984-1180, gnl|monDom2|scaffold_0 (64154962-64154772) | |
| 984-1180, gnl|oryCun1|scaffold_200251 (43583-43393) | |
| 984-1180, gnl|panTro1|chr5 (146780146-146780336) | |
| 984-1180, gnl|rheMac2|chr4 (120186408-120186218) | |
| 984-1180, gnl|rn3|chr1 (8297252-8297062) | |
| 984-1180, gnl|tetNig1|chr10 (11157777-11157587) | |
| 984-1180, gnl|xenTro1|scaffold_259 (549125-548935) | |
| 1661-1991, gnl|bosTau2|chr13 (20129558-20129902) | |
| 1661-1991, gnl|Hg17|chr10 (16618242-16617924) | |
| 1686-1989, gnl|bosTau2|chr10 (24671188-24671504) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-250, gnl|bosTau2|chr9 (48190379-48190638) | |
| 4-250, gnl|Hg17|chr6 (143874509-143874238) | |
| 4-250, gnl|Mm7|chr10 (13201455-13201733) | |
| 434-775, gnl|bosTau2|chr9 (48202260-48202601) | |
| 434-775, gnl|Hg17|chr6 (143867084-143866743) | |
| 434-775, gnl|Mm7|chr10 (13206094-13206435) | |
| 984-1180, gnl|bosTau2|chr9 (48204596-48204792) | |
| 984-1180, gnl|canFam2|chr1 (38079176-38079366) | |
| 984-1180, gnl|danRer3|chr17 (3860904-3861094) | |
| 984-1180, gnl|dasNov1|scaffold_168347 (676-866) | |
| 984-1180, gnl|echTel1|scaffold_180212 (1313-1123) | |
| 984-1180, gnl|fr1|chrUn (2582475-2582285) | |
| 984-1180, gnl|galGal2|chr3 (51383270-51383081) | |
| 984-1180, gnl|hg17|chr6 (143864757-143864947) | |
| 984-1180, gnl|Hg17|chr6 (143864955-143864742) | |
| 984-1180, gnl|loxAfr1|scaffold_10525 (49598-49433) | |
| 984-1180, gnl|mm7|chr10 (13207789-13207599) | |
| 984-1180, gnl|Mm7|chr10 (13207589-13207785) | |
| 984-1180, gnl|monDom2|scaffold_0 (64154962-64154772) | |
| 984-1180, gnl|oryCun1|scaffold_200251 (43583-43393) | |
| 984-1180, gnl|panTro1|chr5 (146780146-146780336) | |
| 984-1180, gnl|rheMac2|chr4 (120186408-120186218) | |
| 984-1180, gnl|rn3|chr1 (8297252-8297062) | |
| 984-1180, gnl|tetNig1|chr10 (11157777-11157587) | |
| 984-1180, gnl|xenTro1|scaffold_259 (549125-548935) | |
| 1661-1991, gnl|bosTau2|chr13 (20129558-20129902) | |
| 1661-1991, gnl|Hg17|chr10 (16618242-16617924) | |
| 1686-1989, gnl|bosTau2|chr10 (24671188-24671504) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| bla (0.746083) | |
| spc (0.340097) | |
| fat (0.294855) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| sag (0.182715) | |
| gul (0.177588) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.746083) | |
| spc (0.340097) | |
| fat (0.294855) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| sag (0.182715) | |
| gul (0.177588) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |