Ss1.1-rspc005_o15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACCCAAGCTGACTGGTCTCTCCGAGATTTCCCAAAGACTGCTCAAGCTCTACGCAGA TAAATTCGGAGCAGACAATGTGAAGATAATCCAGGACTCCAATAAGGTAAACCCCAAGGA TTTGGACCCCAAATATGCCTACATCCAGGTGACCTATGTCACACCGTTCTTTGAGGAAAA GGAACTAGAGGACCGGAAGACGGATTTCGAAATGCACCACAACATCAACCGCTTTGTCTT CGAGACGCCCTTCACGCTCTCGGGCAAGAAGCACGGTGGGGTGGAGGAGCAGTGCAAGCG GAGGACGGTCCTGACAACGAGCCACTTGTTCCCCTACGTGAAGAAGAGGATTCAGGTTAT CAGCCAGTCCAGCACAGAACTGAATCCCATTGAAGTGGCGATTGATGAGATGTCCAAGAA GGTTTCGGAGCTTAACCAGCTTTGCACGATGGAAGAAGTCGACATGATCAGACTTCAGCT CAAACTCCAAGGAAGCGTCAGCGTGAAGGTGAATGCAGGCCCAATGGCCTATGCACGAGC TTTTCTTGAAGAAACCAACGCAAAGAAATACCCTGACAACCAAGTAAAGCTTTTGAAGGA AATCTTCAGGCAATTTGCAGACGCGTGTGGGCAGGCCCTTGACGTGAATGAGCGCCTCAT CAAAGAGGACCAGCTGGAGTACCAGGAGGAACTGAGGTCCCACTACAAGGACATGCTCAG CGAACTCTCCGCAATCATGAATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACCCAAGCTGACTGGTCTCTCCGAGATTTCCCAAAGACTGCTCAAGCTCTACGCAGA TAAATTCGGAGCAGACAATGTGAAGATAATCCAGGACTCCAATAAGGTAAACCCCAAGGA TTTGGACCCCAAATATGCCTACATCCAGGTGACCTATGTCACACCGTTCTTTGAGGAAAA GGAACTAGAGGACCGGAAGACGGATTTCGAAATGCACCACAACATCAACCGCTTTGTCTT CGAGACGCCCTTCACGCTCTCGGGCAAGAAGCACGGTGGGGTGGAGGAGCAGTGCAAGCG GAGGACGGTCCTGACAACGAGCCACTTGTTCCCCTACGTGAAGAAGAGGATTCAGGTTAT CAGCCAGTCCAGCACAGAACTGAATCCCATTGAAGTGGCGATTGATGAGATGTCCAAGAA GGTTTCGGAGCTTAACCAGCTTTGCACGATGGAAGAAGTCGACATGATCAGACTTCAGCT CAAACTCCAAGGAAGCGTCAGCGTGAAGGTGAATGCAGGCCCAATGGCCTATGCACGAGC TTTTCTTGAAGAAACCAACGCAAAGAAATACCCTGACAACCAAGTAAAGCTTTTGAAGGA AATCTTCAGGCAATTTGCAGACGCGTGTGGGCAGGCCCTTGACGTGAATGAGCGCCTCAT CAAAGAGGACCAGCTGGAGTACCAGGAGGAACTGAGGTCCCACTACAAGGACATGCTCAG CGAACTCTCCGCAATCATGAATGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 103-316, gnl|bosTau2|chr12 (40780066-40780279) | |
| 103-316, gnl|Hg17|chr13 (98255468-98255255) | |
| 103-316, gnl|Mm7|chr14 (115959721-115959508) | |
| 323-512, gnl|bosTau2|chr12 (40785687-40785876) | |
| 323-512, gnl|canFam2|chr22 (51834166-51834385) | |
| 323-512, gnl|danRer3|chr6 (7931001-7931199) | |
| 323-512, gnl|dasNov1|scaffold_17596 (1447-1666) | |
| 323-512, gnl|echTel1|scaffold_322732 (97565-97346) | |
| 323-512, gnl|fr1|chrUn (19338315-19338515) | |
| 323-512, gnl|galGal2|chr1 (137438831-137438629) | |
| 323-512, gnl|hg17|chr13 (98250539-98250757) | |
| 323-512, gnl|Hg17|chr13 (98250728-98250539) | |
| 323-512, gnl|loxAfr1|scaffold_49229 (17240-17457) | |
| 323-512, gnl|mm7|chr14 (115954581-115954802) | |
| 323-512, gnl|Mm7|chr14 (115954770-115954581) | |
| 323-512, gnl|monDom2|scaffold_11 (53683726-53683528) | |
| 323-512, gnl|oryCun1|scaffold_214940 (143378-143161) | |
| 323-512, gnl|panTro1|chr14 (81498464-81498682) | |
| 323-512, gnl|rheMac2|chr17 (79173136-79173354) | |
| 323-512, gnl|rn3|chr15 (106654521-106654741) | |
| 323-512, gnl|tetNig1|chr2 (10867705-10867497) | |
| 323-512, gnl|xenTro1|scaffold_340 (39826-40045) | |
| 605-744, gnl|bosTau2|chr12 (40789361-40789500) | |
| 605-744, gnl|Hg17|chr13 (98247513-98247374) | |
| 605-744, gnl|Mm7|chr14 (115950499-115950361) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-316, gnl|bosTau2|chr12 (40780066-40780279) | |
| 103-316, gnl|Hg17|chr13 (98255468-98255255) | |
| 103-316, gnl|Mm7|chr14 (115959721-115959508) | |
| 323-512, gnl|bosTau2|chr12 (40785687-40785876) | |
| 323-512, gnl|canFam2|chr22 (51834166-51834385) | |
| 323-512, gnl|danRer3|chr6 (7931001-7931199) | |
| 323-512, gnl|dasNov1|scaffold_17596 (1447-1666) | |
| 323-512, gnl|echTel1|scaffold_322732 (97565-97346) | |
| 323-512, gnl|fr1|chrUn (19338315-19338515) | |
| 323-512, gnl|galGal2|chr1 (137438831-137438629) | |
| 323-512, gnl|hg17|chr13 (98250539-98250757) | |
| 323-512, gnl|Hg17|chr13 (98250728-98250539) | |
| 323-512, gnl|loxAfr1|scaffold_49229 (17240-17457) | |
| 323-512, gnl|mm7|chr14 (115954581-115954802) | |
| 323-512, gnl|Mm7|chr14 (115954770-115954581) | |
| 323-512, gnl|monDom2|scaffold_11 (53683726-53683528) | |
| 323-512, gnl|oryCun1|scaffold_214940 (143378-143161) | |
| 323-512, gnl|panTro1|chr14 (81498464-81498682) | |
| 323-512, gnl|rheMac2|chr17 (79173136-79173354) | |
| 323-512, gnl|rn3|chr15 (106654521-106654741) | |
| 323-512, gnl|tetNig1|chr2 (10867705-10867497) | |
| 323-512, gnl|xenTro1|scaffold_340 (39826-40045) | |
| 605-744, gnl|bosTau2|chr12 (40789361-40789500) | |
| 605-744, gnl|Hg17|chr13 (98247513-98247374) | |
| 605-744, gnl|Mm7|chr14 (115950499-115950361) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| spl (0.286369) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.286369) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cbl (0.114797) | |
| spc (0.113366) |