Ss1.1-rspc005_o19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAATCAAGAAAGAGAATGGCAGAGCCCAGAAGGAAAGCCTGGCCTTGAAGTTATCAGC AACCACGAGGAGATGGATAAAAAGACCCTTGCTAAGCCTTTGTTGGTGGAGCCTACTGAT GATGATAACGTCATGCCCAGAAATCACGGGGCCGATGATGACAGTGATGATGATGATGAA CACAACGCAAGTGAGGACGCCTTCAACCCAAGTGAGGCTTATCTGGAGCGTGAAAGAGCT CCATCCAATTACTACCACACCAAATACGAGGAGCAAAGAGAAAAAGCACATGAGGGTGAG AATGTAGATACCAGCGAAGCTGCAGAAAACCAAGGGGCCAAGAAAGCAGAGGGCTCACCA AATGAAGATGACAATTCAACTGAAGGCACCACGAGGGGGCACAGTGTTGATTCTTGCATG AGCTTCCAGTGTAAAAGAGGACACATCTGCAAGGCTGATCAACAGGGAAAACCCCACTGT GTTTGCCAAGACCCAGTGACATGTCCTCCTACAAAACTCCTTGACCAAGTTTGTGGCACT GACAATCAGACCTATGCCAGCTCCTGTCATCTCTTTGCTACCAAGTGCAGACTGGAGGGG ACGAAAAAGGGGCACCAACTGCAGCTGGATTACTTTGGAGCCTGCAAATCTATTCCTGCT TGTACGGACTTTGAAGTGACCCAGTTTCCTCTAAGGATGAGAGACTGGCTCAAGAATATC CTCATGCAGCTTTATGAGCCTAACCCTGAACATGCTGGATATCTAAATGAGAAGCAGAGA AATAAAGTCAAGAAAATTTACCTGGATGAAAAGAGGCTCTTGGCTGGGGACCATTCCATC GACCTTCTCTTAAGGGACTTTAAGAAAAACTACCACATGTATGTGTATCCCGTGCACTGG CAGTTCAGTGAGCTTGACCAACATCCGCGGGACAGAGTCCTGACCCACTCTGAGCTCGCT CCTTTGCGAGCATCGCTGGTGCCCATGGAACACTGCATAACACGCTTCTTTGGAGAGTGT GACCCCAACAAGGATAAGCACATCACCCTGAAGGAGTGGGGCCGCTGCTTTGAAATTAAA GAAGAAGACATAGATGAAAATCTCCTGTTTTGAATTAAGATTTGAAAGAACTCAAACTTT TCTGCATCCTCCTGTTTTGATCACTTCTCAAGCATATGCAACGTGATACTTATAGATTTA TATTTAGCAAAATGCTTGCATGTCTAAGAAGACAATGAGAATAACTGCTTGATAACAGTA TGTACACCAGGCATTTAACATTAACTTTGGAAATAAAACGTTTAAATTAAGTAAAGTCAG TATTTGCAAAATACTATACACTGTGAACAGTTTAACTCCTCACTCCCTGCACCCATTCAC AAAATACTTAGATTATAACACTCAAAAAAAAAAAAAAAATACATTCATTGGTCCATAATA ATCATGTGCACTTCAAAAAAGTGAAATAATGTTCCTGCTGATGTGTTTTCAATATCTTAA TTAATATTCTAATAAAATCTATAAAATCTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAATCAAGAAAGAGAATGGCAGAGCCCAGAAGGAAAGCCTGGCCTTGAAGTTATCAGC AACCACGAGGAGATGGATAAAAAGACCCTTGCTAAGCCTTTGTTGGTGGAGCCTACTGAT GATGATAACGTCATGCCCAGAAATCACGGGGCCGATGATGACAGTGATGATGATGATGAA CACAACGCAAGTGAGGACGCCTTCAACCCAAGTGAGGCTTATCTGGAGCGTGAAAGAGCT CCATCCAATTACTACCACACCAAATACGAGGAGCAAAGAGAAAAAGCACATGAGGGTGAG AATGTAGATACCAGCGAAGCTGCAGAAAACCAAGGGGCCAAGAAAGCAGAGGGCTCACCA AATGAAGATGACAATTCAACTGAAGGCACCACGAGGGGGCACAGTGTTGATTCTTGCATG AGCTTCCAGTGTAAAAGAGGACACATCTGCAAGGCTGATCAACAGGGAAAACCCCACTGT GTTTGCCAAGACCCAGTGACATGTCCTCCTACAAAACTCCTTGACCAAGTTTGTGGCACT GACAATCAGACCTATGCCAGCTCCTGTCATCTCTTTGCTACCAAGTGCAGACTGGAGGGG ACGAAAAAGGGGCACCAACTGCAGCTGGATTACTTTGGAGCCTGCAAATCTATTCCTGCT TGTACGGACTTTGAAGTGACCCAGTTTCCTCTAAGGATGAGAGACTGGCTCAAGAATATC CTCATGCAGCTTTATGAGCCTAACCCTGAACATGCTGGATATCTAAATGAGAAGCAGAGA AATAAAGTCAAGAAAATTTACCTGGATGAAAAGAGGCTCTTGGCTGGGGACCATTCCATC GACCTTCTCTTAAGGGACTTTAAGAAAAACTACCACATGTATGTGTATCCCGTGCACTGG CAGTTCAGTGAGCTTGACCAACATCCGCGGGACAGAGTCCTGACCCACTCTGAGCTCGCT CCTTTGCGAGCATCGCTGGTGCCCATGGAACACTGCATAACACGCTTCTTTGGAGAGTGT GACCCCAACAAGGATAAGCACATCACCCTGAAGGAGTGGGGCCGCTGCTTTGAAATTAAA GAAGAAGACATAGATGAAAATCTCCTGTTTTGAATTAAGATTTGAAAGAACTCAAACTTT TCTGCATCCTCCTGTTTTGATCACTTCTCAAGCATATGCAACGTGATACTTATAGATTTA TATTTAGCAAAATGCTTGCATGTCTAAGAAGACAATGAGAATAACTGCTTGATAACAGTA TGTACACCAGGCATTTAACATTAACTTTGGAAATAAAACGTTTAAATTAAGTAAAGTCAG TATTTGCAAAATACTATACACTGTGAACAGTTTAACTCCTCACTCCCTGCACCCATTCAC AAAATACTTAGATTATAACACTCAAAAAAAAAAAAAAAATACATTCATTGGTCCATAATA ATCATGTGCACTTCAAAAAAGTGAAATAATGTTCCTGCTGATGTGTTTTCAATATCTTAA TTAATATTCTAATAAAATCTATAAAATCTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 1-333, gnl|bosTau2|chr6 (58658763-58658431) | |
| 1-333, gnl|Hg17|chr4 (88772272-88771916) | |
| 1-333, gnl|Mm7|chr5 (103282004-103281684) | |
| 520-648, gnl|bosTau2|chr6 (58654758-58654630) | |
| 520-648, gnl|canFam2|chr32 (13871141-13871333) | |
| 520-648, gnl|canFam2|chr4 (60878414-60878321) | |
| 520-648, gnl|danRer3|chr14 (25740305-25740456) | |
| 520-648, gnl|danRer3|chr14 (25740310-25740403) | |
| 520-648, gnl|dasNov1|scaffold_3487 (50864-51054) | |
| 520-648, gnl|dasNov1|scaffold_7506 (58115-58022) | |
| 520-648, gnl|echTel1|scaffold_237194 (7389-7296) | |
| 520-648, gnl|echTel1|scaffold_265932 (4092-4278) | |
| 520-648, gnl|fr1|chrUn (275346781-275346926) | |
| 520-648, gnl|fr1|chrUn (275346786-275346879) | |
| 520-648, gnl|galGal2|chr13 (11874688-11874595) | |
| 520-648, gnl|galGal2|chr4 (46278558-46278411) | |
| 520-648, gnl|hg17|chr4 (88768595-88768786) | |
| 520-648, gnl|Hg17|chr4 (88768733-88768605) | |
| 520-648, gnl|hg17|chr5 (151029414-151029507) | |
| 520-648, gnl|loxAfr1|scaffold_3836 (16475-16568) | |
| 520-648, gnl|loxAfr1|scaffold_80998 (3968-3780) | |
| 520-648, gnl|mm7|chr11 (55358704-55358797) | |
| 520-648, gnl|mm7|chr5 (103277691-103277876) | |
| 520-648, gnl|Mm7|chr5 (103277829-103277701) | |
| 520-648, gnl|monDom2|scaffold_6 (54685084-54684991) | |
| 520-648, gnl|oryCun1|scaffold_186034 (157606-157699) | |
| 520-648, gnl|oryCun1|scaffold_208245 (76450-76264) | |
| 520-648, gnl|panTro1|chr3 (104757156-104757347) | |
| 520-648, gnl|panTro1|chr4 (157979331-157979424) | |
| 520-648, gnl|rheMac2|chr5 (80451966-80452157) | |
| 520-648, gnl|rheMac2|chr6 (148106307-148106400) | |
| 520-648, gnl|rn3|chr10 (40830180-40830273) | |
| 520-648, gnl|rn3|chr14 (6788795-6788610) | |
| 520-648, gnl|tetNig1|chr1_random (4250725-4250583) | |
| 520-648, gnl|tetNig1|chr1_random (4250725-4250631) | |
| 520-648, gnl|xenTro1|scaffold_848 (136082-136268) | |
| 520-648, gnl|xenTro1|scaffold_848 (136085-136178) | |
| 784-935, gnl|bosTau2|chr6 (58649923-58649772) | |
| 784-935, gnl|Hg17|chr4 (88758859-88758703) | |
| 784-935, gnl|Mm7|chr5 (103275166-103275010) | |
| 939-1082, gnl|bosTau2|chr7 (43427271-43427128) | |
| 939-1082, gnl|canFam2|chr4 (60883952-60883774) | |
| 939-1082, gnl|danRer3|chr14 (25737125-25737291) | |
| 939-1082, gnl|dasNov1|scaffold_25214 (438-293) | |
| 939-1082, gnl|echTel1|scaffold_294883 (61008-60830) | |
| 939-1082, gnl|fr1|chrUn (275345732-275345902) | |
| 939-1082, gnl|galGal2|chr13 (11876128-11875956) | |
| 939-1082, gnl|hg17|chr5 (151023823-151024001) | |
| 939-1082, gnl|Hg17|chr5 (151023986-151023843) | |
| 939-1082, gnl|loxAfr1|scaffold_140006 (1172-1313) | |
| 939-1082, gnl|mm7|chr11 (55352540-55352719) | |
| 939-1082, gnl|Mm7|chr11 (55352703-55352560) | |
| 939-1082, gnl|monDom2|scaffold_6 (54690020-54689839) | |
| 939-1082, gnl|oryCun1|scaffold_186034 (153008-153190) | |
| 939-1082, gnl|panTro1|chr4 (157973714-157973892) | |
| 939-1082, gnl|rheMac2|chr6 (148100557-148100735) | |
| 939-1082, gnl|rn3|chr10 (40825037-40825216) | |
| 939-1082, gnl|tetNig1|chr1_random (4251717-4251553) | |
| 939-1082, gnl|xenTro1|scaffold_848 (132867-133042) | |
| 1083-1531, gnl|bosTau2|chr6 (58641723-58641285) | |
| 1083-1531, gnl|canFam2|chr32 (13860466-13861077) | |
| 1083-1531, gnl|echTel1|scaffold_281457 (46316-45748) | |
| 1083-1531, gnl|hg17|chr4 (88751618-88752240) | |
| 1083-1531, gnl|Hg17|chr4 (88752136-88751667) | |
| 1083-1531, gnl|loxAfr1|scaffold_55357 (4893-4261) | |
| 1083-1531, gnl|mm7|chr5 (103268367-103269021) | |
| 1083-1531, gnl|Mm7|chr5 (103268882-103268411) | |
| 1083-1531, gnl|panTro1|chr3 (104740233-104740855) | |
| 1083-1531, gnl|rheMac2|chr5 (80435284-80435865) | |
| 1083-1531, gnl|rn3|chr14 (6797629-6797020) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-333, gnl|bosTau2|chr6 (58658763-58658431) | |
| 1-333, gnl|Hg17|chr4 (88772272-88771916) | |
| 1-333, gnl|Mm7|chr5 (103282004-103281684) | |
| 520-648, gnl|bosTau2|chr6 (58654758-58654630) | |
| 520-648, gnl|canFam2|chr32 (13871141-13871333) | |
| 520-648, gnl|canFam2|chr4 (60878414-60878321) | |
| 520-648, gnl|danRer3|chr14 (25740305-25740456) | |
| 520-648, gnl|danRer3|chr14 (25740310-25740403) | |
| 520-648, gnl|dasNov1|scaffold_3487 (50864-51054) | |
| 520-648, gnl|dasNov1|scaffold_7506 (58115-58022) | |
| 520-648, gnl|echTel1|scaffold_237194 (7389-7296) | |
| 520-648, gnl|echTel1|scaffold_265932 (4092-4278) | |
| 520-648, gnl|fr1|chrUn (275346781-275346926) | |
| 520-648, gnl|fr1|chrUn (275346786-275346879) | |
| 520-648, gnl|galGal2|chr13 (11874688-11874595) | |
| 520-648, gnl|galGal2|chr4 (46278558-46278411) | |
| 520-648, gnl|hg17|chr4 (88768595-88768786) | |
| 520-648, gnl|Hg17|chr4 (88768733-88768605) | |
| 520-648, gnl|hg17|chr5 (151029414-151029507) | |
| 520-648, gnl|loxAfr1|scaffold_3836 (16475-16568) | |
| 520-648, gnl|loxAfr1|scaffold_80998 (3968-3780) | |
| 520-648, gnl|mm7|chr11 (55358704-55358797) | |
| 520-648, gnl|mm7|chr5 (103277691-103277876) | |
| 520-648, gnl|Mm7|chr5 (103277829-103277701) | |
| 520-648, gnl|monDom2|scaffold_6 (54685084-54684991) | |
| 520-648, gnl|oryCun1|scaffold_186034 (157606-157699) | |
| 520-648, gnl|oryCun1|scaffold_208245 (76450-76264) | |
| 520-648, gnl|panTro1|chr3 (104757156-104757347) | |
| 520-648, gnl|panTro1|chr4 (157979331-157979424) | |
| 520-648, gnl|rheMac2|chr5 (80451966-80452157) | |
| 520-648, gnl|rheMac2|chr6 (148106307-148106400) | |
| 520-648, gnl|rn3|chr10 (40830180-40830273) | |
| 520-648, gnl|rn3|chr14 (6788795-6788610) | |
| 520-648, gnl|tetNig1|chr1_random (4250725-4250583) | |
| 520-648, gnl|tetNig1|chr1_random (4250725-4250631) | |
| 520-648, gnl|xenTro1|scaffold_848 (136082-136268) | |
| 520-648, gnl|xenTro1|scaffold_848 (136085-136178) | |
| 784-935, gnl|bosTau2|chr6 (58649923-58649772) | |
| 784-935, gnl|Hg17|chr4 (88758859-88758703) | |
| 784-935, gnl|Mm7|chr5 (103275166-103275010) | |
| 939-1082, gnl|bosTau2|chr7 (43427271-43427128) | |
| 939-1082, gnl|canFam2|chr4 (60883952-60883774) | |
| 939-1082, gnl|danRer3|chr14 (25737125-25737291) | |
| 939-1082, gnl|dasNov1|scaffold_25214 (438-293) | |
| 939-1082, gnl|echTel1|scaffold_294883 (61008-60830) | |
| 939-1082, gnl|fr1|chrUn (275345732-275345902) | |
| 939-1082, gnl|galGal2|chr13 (11876128-11875956) | |
| 939-1082, gnl|hg17|chr5 (151023823-151024001) | |
| 939-1082, gnl|Hg17|chr5 (151023986-151023843) | |
| 939-1082, gnl|loxAfr1|scaffold_140006 (1172-1313) | |
| 939-1082, gnl|mm7|chr11 (55352540-55352719) | |
| 939-1082, gnl|Mm7|chr11 (55352703-55352560) | |
| 939-1082, gnl|monDom2|scaffold_6 (54690020-54689839) | |
| 939-1082, gnl|oryCun1|scaffold_186034 (153008-153190) | |
| 939-1082, gnl|panTro1|chr4 (157973714-157973892) | |
| 939-1082, gnl|rheMac2|chr6 (148100557-148100735) | |
| 939-1082, gnl|rn3|chr10 (40825037-40825216) | |
| 939-1082, gnl|tetNig1|chr1_random (4251717-4251553) | |
| 939-1082, gnl|xenTro1|scaffold_848 (132867-133042) | |
| 1083-1531, gnl|bosTau2|chr6 (58641723-58641285) | |
| 1083-1531, gnl|canFam2|chr32 (13860466-13861077) | |
| 1083-1531, gnl|echTel1|scaffold_281457 (46316-45748) | |
| 1083-1531, gnl|hg17|chr4 (88751618-88752240) | |
| 1083-1531, gnl|Hg17|chr4 (88752136-88751667) | |
| 1083-1531, gnl|loxAfr1|scaffold_55357 (4893-4261) | |
| 1083-1531, gnl|mm7|chr5 (103268367-103269021) | |
| 1083-1531, gnl|Mm7|chr5 (103268882-103268411) | |
| 1083-1531, gnl|panTro1|chr3 (104740233-104740855) | |
| 1083-1531, gnl|rheMac2|chr5 (80435284-80435865) | |
| 1083-1531, gnl|rn3|chr14 (6797629-6797020) |
| Expressed library(ies): 57 entry(ies) | More info |
| Expressed library(ies): 57 entry(ies) | Help | Less info |
| spc (6.91532) | |
| gul (6.57077) | |
| bla (4.72519) | |
| aor (4.68658) | |
| fco (3.14416) | |
| cbe (2.87081) | |
| hea (1.84049) | |
| fbs (1.57812) | |
| hyp (1.28553) | |
| fhi (1.18704) | |
| ova (1.16219) | |
| bfe (1.049) | |
| sto (0.899119) | |
| nlu (0.766724) | |
| hlv (0.696282) | |
| rec (0.692281) | |
| vin (0.665115) | |
| fce (0.543183) | |
| sin (0.524843) | |
| ret (0.514933) | |
| eje (0.494169) | |
| nco (0.485201) | |
| tbr (0.462535) | |
| csk (0.422238) | |
| che (0.408942) | |
| ste (0.405625) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| tra (0.369276) | |
| cut (0.339847) | |
| mga (0.32041) | |
| sme (0.305437) | |
| lun (0.300978) | |
| isp (0.300752) | |
| fat (0.294855) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 57 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (6.91532) | |
| gul (6.57077) | |
| bla (4.72519) | |
| aor (4.68658) | |
| fco (3.14416) | |
| cbe (2.87081) | |
| hea (1.84049) | |
| fbs (1.57812) | |
| hyp (1.28553) | |
| fhi (1.18704) | |
| ova (1.16219) | |
| bfe (1.049) | |
| sto (0.899119) | |
| nlu (0.766724) | |
| hlv (0.696282) | |
| rec (0.692281) | |
| vin (0.665115) | |
| fce (0.543183) | |
| sin (0.524843) | |
| ret (0.514933) | |
| eje (0.494169) | |
| nco (0.485201) | |
| tbr (0.462535) | |
| csk (0.422238) | |
| che (0.408942) | |
| ste (0.405625) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| tra (0.369276) | |
| cut (0.339847) | |
| mga (0.32041) | |
| sme (0.305437) | |
| lun (0.300978) | |
| isp (0.300752) | |
| fat (0.294855) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |