Non-Coding RNA Search

Ss1.1-rspc005_p13.5

Sequence:


               
               GAAATATAGTCTGGGCTGTTGGTAGAAGAGACATTGTTTTACTGTCACTAGCTTGGCACT
GAATTGTTAGGGTGCCCACAAGGTAGGCAGACCTTATGCTTTAGGGGTTGAGGGCAGGCC
TTGTACAAACTAAAAGCTGCTTATGATGTGCCTTCAACAAGCTGCTCAGTCCTCTCCATC
AGCAAACTTAGCAGTCTGTAGTTGCTTTTTTCCTTTTGTTAAGTCTATAGTAATGAATGT
AGATTTAGTTCAAATTTTAGTTATGTTCTCTCAAGAGTTAGAGAACCAGAATTCTCTTAA
GGGAAAAGCAGCAGTTGCTGCCAGTAATCCCCAGGTCATTTTTTTGGTTTTGCATTTTAT
TTGCTACTTATCATTCAATATGATTAACACTGGTCATCTTGAATTCATAGTTGGAACAAA
ATAACAGATCTAACTGGGACACAGCCAGCACAGCACTAGCCCAAGTTGAGCTGCCCCTTT
TCTCTGCAGTTGTGGTTTACTACTTCCCTGGGTTAGAATAACTGGGACCCTTCAGGCAAC
CACCAGTGTGGTAACAATGTGAATTAGATATACTACCTGCTCTGCTTAATTATGTTATGA
AACTGAACTAATCAGCAGTTATAAAGCACATACTCTTTGTTATGTGCTGGCTCTGCCTCC
TGGCCTGTAGATAATTAAGACCTAGGGAATACCATCAAAAGTGCTCACTGTATTGGGTGT
TAACAAAAGCAGATCTAGACAAGCTGTCCACTTAAATGGTACCTTTTGGTCAGAAAAATT
TATTTAAAGATTGTGATCATGTAAAATTACTCAAACCTTCTAGCAAAAATATTTTTTTGA
AAAATAAAATAAATGCCTTTATAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATATAGTCTGGGCTGTTGGTAGAAGAGACATTGTTTTACTGTCACTAGCTTGGCACT
GAATTGTTAGGGTGCCCACAAGGTAGGCAGACCTTATGCTTTAGGGGTTGAGGGCAGGCC
TTGTACAAACTAAAAGCTGCTTATGATGTGCCTTCAACAAGCTGCTCAGTCCTCTCCATC
AGCAAACTTAGCAGTCTGTAGTTGCTTTTTTCCTTTTGTTAAGTCTATAGTAATGAATGT
AGATTTAGTTCAAATTTTAGTTATGTTCTCTCAAGAGTTAGAGAACCAGAATTCTCTTAA
GGGAAAAGCAGCAGTTGCTGCCAGTAATCCCCAGGTCATTTTTTTGGTTTTGCATTTTAT
TTGCTACTTATCATTCAATATGATTAACACTGGTCATCTTGAATTCATAGTTGGAACAAA
ATAACAGATCTAACTGGGACACAGCCAGCACAGCACTAGCCCAAGTTGAGCTGCCCCTTT
TCTCTGCAGTTGTGGTTTACTACTTCCCTGGGTTAGAATAACTGGGACCCTTCAGGCAAC
CACCAGTGTGGTAACAATGTGAATTAGATATACTACCTGCTCTGCTTAATTATGTTATGA
AACTGAACTAATCAGCAGTTATAAAGCACATACTCTTTGTTATGTGCTGGCTCTGCCTCC
TGGCCTGTAGATAATTAAGACCTAGGGAATACCATCAAAAGTGCTCACTGTATTGGGTGT
TAACAAAAGCAGATCTAGACAAGCTGTCCACTTAAATGGTACCTTTTGGTCAGAAAAATT
TATTTAAAGATTGTGATCATGTAAAATTACTCAAACCTTCTAGCAAAAATATTTTTTTGA
AAAATAAAATAAATGCCTTTATAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-262, gnl|bosTau2|chr1 (42935498-42935228)
               

               
               1-262, gnl|Hg17|chr3 (198148686-198149273)
               

               
               1-262, gnl|Mm7|chr16 (31635056-31634818)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr1 (42935498-42935228)
               

               
               1-262, gnl|Hg17|chr3 (198148686-198149273)
               

               
               1-262, gnl|Mm7|chr16 (31635056-31634818)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pan (0.23596)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-262, gnl\|bosTau2\|chr1 (42935498-42935228)
	1-262, gnl\|Hg17\|chr3 (198148686-198149273)
	1-262, gnl\|Mm7\|chr16 (31635056-31634818)

	pan (0.23596)
	spc (0.226732)
	aor (0.195274)
	col (0.195008)
	lun (0.150489)
	hyp (0.142837)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	med (0.116252)
	jca (0.11396)