Non-Coding RNA Search

Ss1.1-rspc006_a24.5

Sequence:


               
               GGCCGCAGCATGGGGCGCTTCCGAGGGGGCCTGCGATGCATCAAGTACCTGCTGCTCGGC
TTCAACCTGCTCTTCTGGCTGGCAGGGTCGGCTGTCATTGCTTTTGGACTGTGGTTTCGG
TTTGGAGGCATCATGAAGGATTTTTCATCGGAGGACAAGTCCCCAGAGTACTTCTACATG
GGGCTCTACGTACTGGTTGGAGCAGGGGTCCTGATGATGGCTGTGGGCTTCTTCGGGTGC
TGCGGAGCCACACGGGAGTCACAGTGTGTTCTCGGATCTTTTTTCACCTGCCTACTAGTG
ATATTTGCTGCTGAAGTAACCACTGGAGTATTTGCTTTTATAGGCAAGGGTGTAGCTATA
CGACATGTTCAGACCATGTATGAAGAGGCTTATAATGATTACCTTAGAGACAGGGAGAAG
GGAAATGGGACTCTCATTACCTTCCACTCAGCGTTTCAGTGCTGTGGAAAAGAAAGCTCT
GAACAGGTCCAACCCACCTGCCCAAAGGAACTCCTAGGACACAAGAACTGCATTGATGAA
ATTGAGACCATAATCAGTGTTAAGCTCCAGCTCGTCGGAATTGTCGGTATTGGAATTGCA
GGTCTCACGATCTTTGGCATGATATTCAGCATGGTCCTCTGCTGTGCAATACGAAATTCA
CAAGATGTGATATGAAGCTACTTCTACATGAAAATTGCAATGTAGAGCATACAAATGTCA
CAGGAGCTGTCTCCTGACTCATTTTTAATAATCAAAGGACATCAGGATCTAAAATAATTT
GCTGTCAATTGTACATTTGCACATGTATGTATGTTTGGCTAATTACTGGCATAGCCCTTG
AGTGAATGCCTGTGTATGTTAACTGAGAGCATATTCATGTGTGAGCTGTGTGTTTCTGGT
ATATGCATTATAAATAATGAACTCTATTTGCTGGGAATTTCTGATTCTTATTATGTGAGA
GGAACAACTTATTTAACTCTCAGAAAAAGATCAAAAACCTTTGATAAACTTTTAAAACTT
GGCTATTTAGAAAAAAATGATAGTGCATCAGTTTCTCAGATTCTGGCCATAGGAAGTTAG
ATACAGAGAATACAGGGATTTCTAGTTAACAGAAGCAACAAGCTACAAAAATCGAAAGAT
CATGGTGCAGTGTTAAAAGTGATTATGTTTGGATTAGGTGCAAGGGTTTCCTGGGATTTT
TTATATACATACTCTCCCAAGAATTTAGACCTACGCACATCTATAAAACTAAATATAGCA
TGGAAAATCTAATTTGAATAAGTCATACTTTCCTAGTATTTAAAAACAAAAACCTCGCTC
TGGAAAGAGTGTCACAGAGACAATCATGTGCCCTATAAAACTGAGTGTTTTTAGGACTAA
AAAACAAAAAGAACTTTTAACAACTTTTTAAGGAAATATTTTTGTTCTTTATATAAAGAC
TTTTAAATATTGCTTTATTACTTTCCTTTTCTGACTCTGCTCTTCTGAACTACTGCAACA
ATCATATCCACAAAAGGGCTTTTATCTCAAACTTTTCTGGTGTTTTTCCAGATGTAAGCA
TAGAAAGACTAAAGCAAGAGATCTGGCAGTTGCAAATTGTGGGAAAGAGAATTTTTACTG
GCACTGTATATTTGAAATACCTCATAACTTGAGTTTACATATTTTACTAATTTTTGTATT
TTTCTTATTTATTCACCTAGAGAAGTCTTCTTTATAGATTAAGAACTACAATTTTCACCA
TTTAAAATATACTATATCATAAGCATTCTTGGCCAAACCAAAATAAAGAAAAACATCCTC
TGCCAGGAGATTTTGTGCATACAACAGAATCAAGCAAGGAAACAAAAATACTTAGACACA
ACGGAAATATATTCTTTCTGTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCAGCATGGGGCGCTTCCGAGGGGGCCTGCGATGCATCAAGTACCTGCTGCTCGGC
TTCAACCTGCTCTTCTGGCTGGCAGGGTCGGCTGTCATTGCTTTTGGACTGTGGTTTCGG
TTTGGAGGCATCATGAAGGATTTTTCATCGGAGGACAAGTCCCCAGAGTACTTCTACATG
GGGCTCTACGTACTGGTTGGAGCAGGGGTCCTGATGATGGCTGTGGGCTTCTTCGGGTGC
TGCGGAGCCACACGGGAGTCACAGTGTGTTCTCGGATCTTTTTTCACCTGCCTACTAGTG
ATATTTGCTGCTGAAGTAACCACTGGAGTATTTGCTTTTATAGGCAAGGGTGTAGCTATA
CGACATGTTCAGACCATGTATGAAGAGGCTTATAATGATTACCTTAGAGACAGGGAGAAG
GGAAATGGGACTCTCATTACCTTCCACTCAGCGTTTCAGTGCTGTGGAAAAGAAAGCTCT
GAACAGGTCCAACCCACCTGCCCAAAGGAACTCCTAGGACACAAGAACTGCATTGATGAA
ATTGAGACCATAATCAGTGTTAAGCTCCAGCTCGTCGGAATTGTCGGTATTGGAATTGCA
GGTCTCACGATCTTTGGCATGATATTCAGCATGGTCCTCTGCTGTGCAATACGAAATTCA
CAAGATGTGATATGAAGCTACTTCTACATGAAAATTGCAATGTAGAGCATACAAATGTCA
CAGGAGCTGTCTCCTGACTCATTTTTAATAATCAAAGGACATCAGGATCTAAAATAATTT
GCTGTCAATTGTACATTTGCACATGTATGTATGTTTGGCTAATTACTGGCATAGCCCTTG
AGTGAATGCCTGTGTATGTTAACTGAGAGCATATTCATGTGTGAGCTGTGTGTTTCTGGT
ATATGCATTATAAATAATGAACTCTATTTGCTGGGAATTTCTGATTCTTATTATGTGAGA
GGAACAACTTATTTAACTCTCAGAAAAAGATCAAAAACCTTTGATAAACTTTTAAAACTT
GGCTATTTAGAAAAAAATGATAGTGCATCAGTTTCTCAGATTCTGGCCATAGGAAGTTAG
ATACAGAGAATACAGGGATTTCTAGTTAACAGAAGCAACAAGCTACAAAAATCGAAAGAT
CATGGTGCAGTGTTAAAAGTGATTATGTTTGGATTAGGTGCAAGGGTTTCCTGGGATTTT
TTATATACATACTCTCCCAAGAATTTAGACCTACGCACATCTATAAAACTAAATATAGCA
TGGAAAATCTAATTTGAATAAGTCATACTTTCCTAGTATTTAAAAACAAAAACCTCGCTC
TGGAAAGAGTGTCACAGAGACAATCATGTGCCCTATAAAACTGAGTGTTTTTAGGACTAA
AAAACAAAAAGAACTTTTAACAACTTTTTAAGGAAATATTTTTGTTCTTTATATAAAGAC
TTTTAAATATTGCTTTATTACTTTCCTTTTCTGACTCTGCTCTTCTGAACTACTGCAACA
ATCATATCCACAAAAGGGCTTTTATCTCAAACTTTTCTGGTGTTTTTCCAGATGTAAGCA
TAGAAAGACTAAAGCAAGAGATCTGGCAGTTGCAAATTGTGGGAAAGAGAATTTTTACTG
GCACTGTATATTTGAAATACCTCATAACTTGAGTTTACATATTTTACTAATTTTTGTATT
TTTCTTATTTATTCACCTAGAGAAGTCTTCTTTATAGATTAAGAACTACAATTTTCACCA
TTTAAAATATACTATATCATAAGCATTCTTGGCCAAACCAAAATAAAGAAAAACATCCTC
TGCCAGGAGATTTTGTGCATACAACAGAATCAAGCAAGGAAACAAAAATACTTAGACACA
ACGGAAATATATTCTTTCTGTGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TET2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TET2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1245-1356, + strand, RNAz p=0.516196
               

               
               1750-1849, - strand, RNAz p=0.99466

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1245-1356, + strand, RNAz p=0.516196
               

               
               1750-1849, - strand, RNAz p=0.99466

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005725, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005725, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               78-182, gnl|bosTau2|chr3 (24231908-24232012)
               

               
               78-182, gnl|canFam2|chr17 (55801653-55801805)
               

               
               78-182, gnl|dasNov1|scaffold_6753 (35603-35751)
               

               
               78-182, gnl|echTel1|scaffold_314242 (1367-1223)
               

               
               78-182, gnl|hg17|chr1 (115327562-115327713)
               

               
               78-182, gnl|Hg17|chr1 (115327671-115327567)
               

               
               78-182, gnl|mm7|chr3 (102543760-102543613)
               

               
               78-182, gnl|Mm7|chr3 (102543649-102543753)
               

               
               78-182, gnl|monDom2|scaffold_82 (418451-418602)
               

               
               78-182, gnl|oryCun1|scaffold_175955 (43671-43521)
               

               
               78-182, gnl|panTro1|chr1 (115132662-115132813)
               

               
               78-182, gnl|rheMac2|chr1 (118051579-118051730)
               

               
               78-182, gnl|rn3|chr2 (197839117-197838970)
               


               
               602-1884, gnl|bosTau2|chr3 (24253483-24254736)
               

               
               602-1884, gnl|Hg17|chr1 (115305225-115303913)
               

               
               602-1884, gnl|Mm7|chr3 (102562762-102564003)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-182, gnl|bosTau2|chr3 (24231908-24232012)
               

               
               78-182, gnl|canFam2|chr17 (55801653-55801805)
               

               
               78-182, gnl|dasNov1|scaffold_6753 (35603-35751)
               

               
               78-182, gnl|echTel1|scaffold_314242 (1367-1223)
               

               
               78-182, gnl|hg17|chr1 (115327562-115327713)
               

               
               78-182, gnl|Hg17|chr1 (115327671-115327567)
               

               
               78-182, gnl|mm7|chr3 (102543760-102543613)
               

               
               78-182, gnl|Mm7|chr3 (102543649-102543753)
               

               
               78-182, gnl|monDom2|scaffold_82 (418451-418602)
               

               
               78-182, gnl|oryCun1|scaffold_175955 (43671-43521)
               

               
               78-182, gnl|panTro1|chr1 (115132662-115132813)
               

               
               78-182, gnl|rheMac2|chr1 (118051579-118051730)
               

               
               78-182, gnl|rn3|chr2 (197839117-197838970)
               


               
               602-1884, gnl|bosTau2|chr3 (24253483-24254736)
               

               
               602-1884, gnl|Hg17|chr1 (115305225-115303913)
               

               
               602-1884, gnl|Mm7|chr3 (102562762-102564003)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fco (0.628832)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	1245-1356, + strand, RNAz p=0.516196
	1750-1849, - strand, RNAz p=0.99466

	78-182, gnl\|bosTau2\|chr3 (24231908-24232012)
	78-182, gnl\|canFam2\|chr17 (55801653-55801805)
	78-182, gnl\|dasNov1\|scaffold_6753 (35603-35751)
	78-182, gnl\|echTel1\|scaffold_314242 (1367-1223)
	78-182, gnl\|hg17\|chr1 (115327562-115327713)
	78-182, gnl\|Hg17\|chr1 (115327671-115327567)
	78-182, gnl\|mm7\|chr3 (102543760-102543613)
	78-182, gnl\|Mm7\|chr3 (102543649-102543753)
	78-182, gnl\|monDom2\|scaffold_82 (418451-418602)
	78-182, gnl\|oryCun1\|scaffold_175955 (43671-43521)
	78-182, gnl\|panTro1\|chr1 (115132662-115132813)
	78-182, gnl\|rheMac2\|chr1 (118051579-118051730)
	78-182, gnl\|rn3\|chr2 (197839117-197838970)

	602-1884, gnl\|bosTau2\|chr3 (24253483-24254736)
	602-1884, gnl\|Hg17\|chr1 (115305225-115303913)
	602-1884, gnl\|Mm7\|chr3 (102562762-102564003)

	fco (0.628832)
	liv (0.292569)
	lin (0.291206)
	spl (0.286369)
	ova (0.258264)
	ret (0.257467)
	tra (0.246184)
	hea (0.204499)
	aor (0.195274)
	cut (0.169924)
	bla (0.124347)
	spc (0.113366)