Non-Coding RNA Search

Ss1.1-rspc006_c21.5

Sequence:


               
               GGCGGCGGCGGCTGCCAAAGACGAGGGTCCCCACTCTGCAGTGTCTGATGACGCCAAGAA
ATAAGCGGGGGCCGAGATGGCAGAAGAATGACGATGCAGATCAAAACCCAGATTTTTTTT
TTTTTTTTTTAATATTGGTGGACTTGAAAAGGCTCAGGTTTTGCACCAAAATTCAACGTG
AATCAATTCTGACATTCCTGAAACAATACTAAATTGATGCAATCCGATTCTGGCCAGCCC
GTTTCAAATGTGATTTCCAATTGGAACACAAAAACATCGAAAAGTCTTGAAAAGGAGTTA
AATTTAAAATGATGTTTTCATGATCTCTTCTGCGAGGACTGGAGTTGAGACTTACGAAGG
GTGTCAAGCAGATATGAAGTAAAGACGTCACTTTGAAACCCTTTCATCACACCATCATCG
CCCCACGCACTGAACCCACACACAAGCCGAGACGGAACGTGTTTCCAAAGCCCAATTCTT
CCATTTCTTTAGCCCTGCAGTTTTCCAGCGCAGAGAAGAAGAACCCAAGAAAAAAAATCT
CATCTTTTAAGACTTTGCTTTTATAACCTAGACCTCAGCTTCACACTTTTCGAGAAGCGT
GATGGAATGCAGGAAGCCGGTGCCAGAGATCATGACAGTACTGTTAATGAGGCCAAGAAA
ACTGCCACTTCAAATTCTAAAGACTGTGCTGAGTATGTGAATGTAGTGAAACAACGTGGT
TCTGAGAAGGAGGGTGTAGAACCTGTACAATATTGTCAACATACGTGTGCATTATTTAGA
GTCTCGTGTTTATGTGTGTTTTCTTGAGCGTGTCTACTTACAAAGGTGTAAACCCCCCCC
CCCCGATGTTTAAGTATTAAATCCCTTTATTTAGCATTGTAGAAATCTTAATTTAATTGA
AACGATGTAGAATCTAGTAAATTCTGTAAGGCATGTGTATCCAATGTTATGTAGTTTAAT
CCTTGTGAAGTCTTTTTTGTCTTGTAGCTTTTAGGAGGTAGCTGTGAAAATGATCAGAAC
TCTTCACTGAAGCTAATGTTCAGAAAAAATATATACTTGAAGAACCAATCCAACTGTGTG
TCCCCACCCCCAGCTCAGAAGTAGAAAGGGTTTCAGTTTGCTTGTGTTAGCTGTGCCTTC
ATTATTTTGCTATGTACATGTGATAGATTAAATATAAAATGGTGCATAATCAAATTTTAC
TGCTTGAGAACAGACTGGCATACAGTAAAGGAGTTTTAGGAGGACACATGTAATGGAAAG
GCTCTTAGCTTCCTTGTGGGTTTTGAATTGTGTGATCTGTAAAGAAACATGCGAATAAAG
TTGTTTACCACTGTGGTGTTAATAAAACAGTATTTTCAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCGGCGGCTGCCAAAGACGAGGGTCCCCACTCTGCAGTGTCTGATGACGCCAAGAA
ATAAGCGGGGGCCGAGATGGCAGAAGAATGACGATGCAGATCAAAACCCAGATTTTTTTT
TTTTTTTTTTAATATTGGTGGACTTGAAAAGGCTCAGGTTTTGCACCAAAATTCAACGTG
AATCAATTCTGACATTCCTGAAACAATACTAAATTGATGCAATCCGATTCTGGCCAGCCC
GTTTCAAATGTGATTTCCAATTGGAACACAAAAACATCGAAAAGTCTTGAAAAGGAGTTA
AATTTAAAATGATGTTTTCATGATCTCTTCTGCGAGGACTGGAGTTGAGACTTACGAAGG
GTGTCAAGCAGATATGAAGTAAAGACGTCACTTTGAAACCCTTTCATCACACCATCATCG
CCCCACGCACTGAACCCACACACAAGCCGAGACGGAACGTGTTTCCAAAGCCCAATTCTT
CCATTTCTTTAGCCCTGCAGTTTTCCAGCGCAGAGAAGAAGAACCCAAGAAAAAAAATCT
CATCTTTTAAGACTTTGCTTTTATAACCTAGACCTCAGCTTCACACTTTTCGAGAAGCGT
GATGGAATGCAGGAAGCCGGTGCCAGAGATCATGACAGTACTGTTAATGAGGCCAAGAAA
ACTGCCACTTCAAATTCTAAAGACTGTGCTGAGTATGTGAATGTAGTGAAACAACGTGGT
TCTGAGAAGGAGGGTGTAGAACCTGTACAATATTGTCAACATACGTGTGCATTATTTAGA
GTCTCGTGTTTATGTGTGTTTTCTTGAGCGTGTCTACTTACAAAGGTGTAAACCCCCCCC
CCCCGATGTTTAAGTATTAAATCCCTTTATTTAGCATTGTAGAAATCTTAATTTAATTGA
AACGATGTAGAATCTAGTAAATTCTGTAAGGCATGTGTATCCAATGTTATGTAGTTTAAT
CCTTGTGAAGTCTTTTTTGTCTTGTAGCTTTTAGGAGGTAGCTGTGAAAATGATCAGAAC
TCTTCACTGAAGCTAATGTTCAGAAAAAATATATACTTGAAGAACCAATCCAACTGTGTG
TCCCCACCCCCAGCTCAGAAGTAGAAAGGGTTTCAGTTTGCTTGTGTTAGCTGTGCCTTC
ATTATTTTGCTATGTACATGTGATAGATTAAATATAAAATGGTGCATAATCAAATTTTAC
TGCTTGAGAACAGACTGGCATACAGTAAAGGAGTTTTAGGAGGACACATGTAATGGAAAG
GCTCTTAGCTTCCTTGTGGGTTTTGAATTGTGTGATCTGTAAAGAAACATGCGAATAAAG
TTGTTTACCACTGTGGTGTTAATAAAACAGTATTTTCAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1368, gnl|bosTau2|chr6 (19413572-19414894)
               

               
               1-1368, gnl|Hg17|chr4 (89975593-89974236)
               

               
               1-1368, gnl|Mm7|chr6 (58874643-58873365)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1368, gnl|bosTau2|chr6 (19413572-19414894)
               

               
               1-1368, gnl|Hg17|chr4 (89975593-89974236)
               

               
               1-1368, gnl|Mm7|chr6 (58874643-58873365)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               spc (1.36039)
               

               
               cbe (0.717703)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               kid (0.389206)
               

               
               fco (0.314416)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ute (0.132784)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.36039)
               

               
               cbe (0.717703)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               kid (0.389206)
               

               
               fco (0.314416)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ute (0.132784)

	1-1368, gnl\|bosTau2\|chr6 (19413572-19414894)
	1-1368, gnl\|Hg17\|chr4 (89975593-89974236)
	1-1368, gnl\|Mm7\|chr6 (58874643-58873365)

	spc (1.36039)
	cbe (0.717703)
	fbs (0.526039)
	fhi (0.508733)
	kid (0.389206)
	fco (0.314416)
	hyp (0.285673)
	fce (0.271592)
	pla (0.267344)
	sug (0.254582)
	pgl (0.236967)
	cst (0.140036)
	ste (0.135208)
	ute (0.132784)