Ss1.1-rspc006_d15.5
|
GACTAGAGCAGCCCCTCTCTTGCCACTAGGTTCATGGTCCGAAGACTGCCAGTTTTGCCA
GTCTTGCTTTCGCTGGCCTCTCCGAGTGGAGCTAGACAACACTCTGGGATCTGGGAAAAG
CAGACTTTTCTAAGGCAGACAGTGGAAGTGCAAGAGGCCGCATCTCTTTTTCAGATTTGC
CCATCTCCAGTGGAAGGTTTTTAATGAAAAGATAAAGAAAATGTGAGATCCTTTAGTAAC
TTCCCCTATATAAAGTGGATATAGTTTATACCAAAATTATAATATAGAGATATAAAAAAT
ATAGGTGCCTTTTTGATCACCCTTGTCTCTCCAATATGGTCTTGGGAAGAAAACCAAGCA
CGCAAGCATCTGCCTACTCTGTAGTACTATTTTATTATGTGATCAGTATTTTTATGGTGG
GGACAGATGAGATATTCCTGACAGATATGAAAGGTGATAGCTGATTATATTTTACCTCTA
AAGCTTTGGAACTTTAGAAAATACTGACTTCTTCCATTTATTTCTGAAAGGCTCTCTGTG
GATTTATATATTGTTGAGCTGCATAAACATTAACCTTAGGTCTGAGATTTAAAACACCTA
TTATAAGATAGAAGAATTATGTTATAAGGCTGAATTCGTGACCCAAGATGAAGTTCACTT
CAAAAATCCATTGTACCGTAGCTATTTGCTTCTGATCATCTGAAAATGGCTAGCGTGGGT
TGTTTGGGTGGCATGGAGGTGAGAAAGCTTTAGTTAATAAGAAGCTCTGTAAACCAAGTG
AAGAATGCTAACAGGAACGTCTCTTTCCGAAGTATTCCGTGCCCATTAGGGTTCTTTCCA
GGCAACTGTCAATTAGTGGTGATGAAAACCACAAAGGCAATTGTGTGATGCTTCTGTGGA
ATCCACAAGCCTGGAAGGATCCCTAGGGCACCGTCTCCTCCCTAGTCGTCCGGGTTACTT
CAGTATAGTCACAGGAATTCCATGTGCTTTTGTGTTTGATACGTGGTATCCAGTTTGCAT
AGTATATACTTCTCTGTGATGCAGCTGCTGTTAAGGATGATTTTCTTGAAAGGAAAAGAG
AGAACTGCATCATGGCCCCATTCTTCTGTGTCCATATGACGAACGGCTGAGCACTTAGAA
GCAGCACTGCGTGTATCACAGGCCAGGGGTGTGGAACTGTTGGTCTTAGACCTGCGGTAA
AAATGCAAAATTGGATCATTGTGAAGACTGGCCTCTCTTTGCTTCAAAATATGTAGACTT
GTGATTGATGATTCATTTGCAGGATTGTTCTAACTATGAGAGCGTTAAGAAACACATCAT
GGTTTTAAAATGAAGGGGCTTACAGAACGATGCAATGTTATAAATATAATTTGGCTTTTG
TTATGCAAATTGTTAACACCAGCTATTAAAATATATTTTAGTAGAAATGCTTTAATTCAT
GTTTTTTTCCTCTACACTGTGAATCTTTAAGCCTTGGTGGACTAGAGCAACATTGTGCTG
CCCAAAGGACTAACCTATGCAACTAGTTCACATTTTAGTGGATGTCACAGTAATTGTGTA
ATGAGACATTCTTTCCCGCCCGCGATGGACAGCAGCATTGAAATAACACGTTAAGCCTAG
CCTCATGTATGTATAGTACAGTTACTCACAAACCCTTCAAGGCTACCATAACCACTAGCA
CTATCCGTCGTATAAAAGCAGATCACTGATTTATCTATGAAAAAGACTTGAATGATGTCA
GAACAAGAACGACAGATGAATGCGTCGGCCGTGGCTTCCATGTGGTCACTGAAAGTTGTT
CCCTGTGATGGAAGCGTGTTCTCAGATGCACTCTCTCCAGGGTATTATTATTCTGTGTCT
TTCTTTCTGTATTTGTAAAACATTATAATGCTTTAATTTCCTATCTCTACACATTCGGTT
TGCTTAAATAAATGCAGGATATAACAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACTAGAGCAGCCCCTCTCTTGCCACTAGGTTCATGGTCCGAAGACTGCCAGTTTTGCCA
GTCTTGCTTTCGCTGGCCTCTCCGAGTGGAGCTAGACAACACTCTGGGATCTGGGAAAAG
CAGACTTTTCTAAGGCAGACAGTGGAAGTGCAAGAGGCCGCATCTCTTTTTCAGATTTGC
CCATCTCCAGTGGAAGGTTTTTAATGAAAAGATAAAGAAAATGTGAGATCCTTTAGTAAC
TTCCCCTATATAAAGTGGATATAGTTTATACCAAAATTATAATATAGAGATATAAAAAAT
ATAGGTGCCTTTTTGATCACCCTTGTCTCTCCAATATGGTCTTGGGAAGAAAACCAAGCA
CGCAAGCATCTGCCTACTCTGTAGTACTATTTTATTATGTGATCAGTATTTTTATGGTGG
GGACAGATGAGATATTCCTGACAGATATGAAAGGTGATAGCTGATTATATTTTACCTCTA
AAGCTTTGGAACTTTAGAAAATACTGACTTCTTCCATTTATTTCTGAAAGGCTCTCTGTG
GATTTATATATTGTTGAGCTGCATAAACATTAACCTTAGGTCTGAGATTTAAAACACCTA
TTATAAGATAGAAGAATTATGTTATAAGGCTGAATTCGTGACCCAAGATGAAGTTCACTT
CAAAAATCCATTGTACCGTAGCTATTTGCTTCTGATCATCTGAAAATGGCTAGCGTGGGT
TGTTTGGGTGGCATGGAGGTGAGAAAGCTTTAGTTAATAAGAAGCTCTGTAAACCAAGTG
AAGAATGCTAACAGGAACGTCTCTTTCCGAAGTATTCCGTGCCCATTAGGGTTCTTTCCA
GGCAACTGTCAATTAGTGGTGATGAAAACCACAAAGGCAATTGTGTGATGCTTCTGTGGA
ATCCACAAGCCTGGAAGGATCCCTAGGGCACCGTCTCCTCCCTAGTCGTCCGGGTTACTT
CAGTATAGTCACAGGAATTCCATGTGCTTTTGTGTTTGATACGTGGTATCCAGTTTGCAT
AGTATATACTTCTCTGTGATGCAGCTGCTGTTAAGGATGATTTTCTTGAAAGGAAAAGAG
AGAACTGCATCATGGCCCCATTCTTCTGTGTCCATATGACGAACGGCTGAGCACTTAGAA
GCAGCACTGCGTGTATCACAGGCCAGGGGTGTGGAACTGTTGGTCTTAGACCTGCGGTAA
AAATGCAAAATTGGATCATTGTGAAGACTGGCCTCTCTTTGCTTCAAAATATGTAGACTT
GTGATTGATGATTCATTTGCAGGATTGTTCTAACTATGAGAGCGTTAAGAAACACATCAT
GGTTTTAAAATGAAGGGGCTTACAGAACGATGCAATGTTATAAATATAATTTGGCTTTTG
TTATGCAAATTGTTAACACCAGCTATTAAAATATATTTTAGTAGAAATGCTTTAATTCAT
GTTTTTTTCCTCTACACTGTGAATCTTTAAGCCTTGGTGGACTAGAGCAACATTGTGCTG
CCCAAAGGACTAACCTATGCAACTAGTTCACATTTTAGTGGATGTCACAGTAATTGTGTA
ATGAGACATTCTTTCCCGCCCGCGATGGACAGCAGCATTGAAATAACACGTTAAGCCTAG
CCTCATGTATGTATAGTACAGTTACTCACAAACCCTTCAAGGCTACCATAACCACTAGCA
CTATCCGTCGTATAAAAGCAGATCACTGATTTATCTATGAAAAAGACTTGAATGATGTCA
GAACAAGAACGACAGATGAATGCGTCGGCCGTGGCTTCCATGTGGTCACTGAAAGTTGTT
CCCTGTGATGGAAGCGTGTTCTCAGATGCACTCTCTCCAGGGTATTATTATTCTGTGTCT
TTCTTTCTGTATTTGTAAAACATTATAATGCTTTAATTTCCTATCTCTACACATTCGGTT
TGCTTAAATAAATGCAGGATATAACAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
47-899, gnl|bosTau2|chr13 (10980874-10980006) |
|
47-899, gnl|Hg17|chr10 (21111483-21110642) |
|
47-899, gnl|Mm7|chr2 (17410636-17409785) |
| |
|
901-1949, gnl|bosTau2|chr13 (10979976-10978930) |
|
901-1949, gnl|canFam2|chr2 (15123131-15121709) |
|
901-1949, gnl|dasNov1|scaffold_25519 (4679-6105) |
|
901-1949, gnl|echTel1|scaffold_155215 (3595-2158) |
|
901-1949, gnl|galGal2|chr2 (17675618-17674165) |
|
901-1949, gnl|hg17|chr10 (21109500-21110922) |
|
901-1949, gnl|Hg17|chr10 (21110611-21109572) |
|
901-1949, gnl|loxAfr1|scaffold_313 (108864-110303) |
|
901-1949, gnl|mm7|chr2 (17408680-17410084) |
|
901-1949, gnl|Mm7|chr2 (17409753-17408735) |
|
901-1949, gnl|monDom2|scaffold_7 (48276150-48274660) |
|
901-1949, gnl|oryCun1|scaffold_196184 (25545-26965) |
|
901-1949, gnl|panTro1|chr8 (21284889-21286305) |
|
901-1949, gnl|rheMac2|chr9 (21012710-21014132) |
|
901-1949, gnl|rn3|chr17 (91525110-91526518) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
47-899, gnl|bosTau2|chr13 (10980874-10980006) |
|
47-899, gnl|Hg17|chr10 (21111483-21110642) |
|
47-899, gnl|Mm7|chr2 (17410636-17409785) |
| |
|
901-1949, gnl|bosTau2|chr13 (10979976-10978930) |
|
901-1949, gnl|canFam2|chr2 (15123131-15121709) |
|
901-1949, gnl|dasNov1|scaffold_25519 (4679-6105) |
|
901-1949, gnl|echTel1|scaffold_155215 (3595-2158) |
|
901-1949, gnl|galGal2|chr2 (17675618-17674165) |
|
901-1949, gnl|hg17|chr10 (21109500-21110922) |
|
901-1949, gnl|Hg17|chr10 (21110611-21109572) |
|
901-1949, gnl|loxAfr1|scaffold_313 (108864-110303) |
|
901-1949, gnl|mm7|chr2 (17408680-17410084) |
|
901-1949, gnl|Mm7|chr2 (17409753-17408735) |
|
901-1949, gnl|monDom2|scaffold_7 (48276150-48274660) |
|
901-1949, gnl|oryCun1|scaffold_196184 (25545-26965) |
|
901-1949, gnl|panTro1|chr8 (21284889-21286305) |
|
901-1949, gnl|rheMac2|chr9 (21012710-21014132) |
|
901-1949, gnl|rn3|chr17 (91525110-91526518) |
|
hea (1.63599) |
|
cbe (1.19617) |
|
hlv (0.696282) |
|
ret (0.643666) |
|
sag (0.36543) |
|
mga (0.32041) |
|
cte (0.29274) |
|
lnt (0.284616) |
|
che (0.272628) |
|
fce (0.271592) |
|
pgl (0.236967) |
|
spc (0.226732) |
|
fcc (0.197785) |
|
cmu (0.186393) |
|
fhi (0.169578) |
|
lun (0.150489) |
|
liv (0.146284) |
|
cst (0.140036) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
bla (0.124347) |
|
tra (0.123092) |
|
hea (1.63599) |
|
cbe (1.19617) |
|
hlv (0.696282) |
|
ret (0.643666) |
|
sag (0.36543) |
|
mga (0.32041) |
|
cte (0.29274) |
|
lnt (0.284616) |
|
che (0.272628) |
|
fce (0.271592) |
|
pgl (0.236967) |
|
spc (0.226732) |
|
fcc (0.197785) |
|
cmu (0.186393) |
|
fhi (0.169578) |
|
lun (0.150489) |
|
liv (0.146284) |
|
cst (0.140036) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
bla (0.124347) |
|
tra (0.123092) |
