Ss1.1-rspc006_g17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCATCCTTGGTGGCACTTGCCGTCATAATTCGTCCCACGGCTGTTATCCCCTGGATACC TTTGCTGTTCAGACATTTCTGGCAAGAACAGAAAAAACTTGATCTTATTCTACATAAGTT TTTACCTGTAGGATTTGTCACTTTGAGTCTGTCTCTGATAATTGATCGTATTTTTTTTGG TCAATGGACTCTGGTTCAATATAATTTTCTGAAATTTAACGTGCTACAGAACTTGGGATC ATTTTATGGTTCTCATCCATGGCACTGGTACTTCAGTCAAGGATTTCCAGCTGTCCTGGG TACTCACTTACCCTTCTTTATTCATGGCTGCTTTCTAACTCCAAAGAGGTACAGAATATT TTTGGTGACTGTGCTGTGGACACTGCTGGTTTATAGCATGTTGAGCCACAAAGAATTCAG GTTTATCTATCCGGTTTTACCATTTTGTATGGTGTTCTGTGGATACTCACTAAACAGCCT GAAGACATGGAAGAAAGCAGCTCTAAGTTTCCTGTTTTTATCAAATACACTTCTTGCCCT CTATACTGGTTTAGTTCATCAACGAGGTACTCTTGATGTCATGACTAATATTCAAGAACT CTGTTACAACAATCCAAATATATCTAAAGCTTCAGTATTTATGATGATGCCTTGCCACTC TACTCCTTATTATAGCCATGTCCACTACCCACTTCCAATGAGATTTCTCCAATGTCCCCC AGACCTGACTGGAAAAAGTGATTATCTTGTTGAAGCAGATATATTTTATCTAAATCCCTT AAAGTGGCTGTATAGAGAGTTTCACAATGATTCAACACTGCCTACTCACTTGATCATCTT CAATGTTTTGGAGAAGGAAATAAGTCCTTTCCTAATTTCACACAACTACGAACGAACTGC TGTTTTCTTCCACACTCACTTTCCGGAGCATTGGACTGGAAATCACATATACGTCTACGA ACGGAAGTTAAAAGGGAAACTCAACCAAAGATGAAATTCTGGACTGTGTTTAGATCTTTC TCAGAGAAATAAACACTGCTGAGCGGAAATATTCAGATGCTGCTTAACCATGCTAGTAAA TACTGGGTAATATCCATGGAACTAGCGAAAAACCACTATAAACTGCTTTACCAAATATCA CTACTGAGGAAATGTTTGAAAAAAATCACAAAATATAAAATCATATATTAATACAATGCT AGATATTTTAAATAAAGACCTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCATCCTTGGTGGCACTTGCCGTCATAATTCGTCCCACGGCTGTTATCCCCTGGATACC TTTGCTGTTCAGACATTTCTGGCAAGAACAGAAAAAACTTGATCTTATTCTACATAAGTT TTTACCTGTAGGATTTGTCACTTTGAGTCTGTCTCTGATAATTGATCGTATTTTTTTTGG TCAATGGACTCTGGTTCAATATAATTTTCTGAAATTTAACGTGCTACAGAACTTGGGATC ATTTTATGGTTCTCATCCATGGCACTGGTACTTCAGTCAAGGATTTCCAGCTGTCCTGGG TACTCACTTACCCTTCTTTATTCATGGCTGCTTTCTAACTCCAAAGAGGTACAGAATATT TTTGGTGACTGTGCTGTGGACACTGCTGGTTTATAGCATGTTGAGCCACAAAGAATTCAG GTTTATCTATCCGGTTTTACCATTTTGTATGGTGTTCTGTGGATACTCACTAAACAGCCT GAAGACATGGAAGAAAGCAGCTCTAAGTTTCCTGTTTTTATCAAATACACTTCTTGCCCT CTATACTGGTTTAGTTCATCAACGAGGTACTCTTGATGTCATGACTAATATTCAAGAACT CTGTTACAACAATCCAAATATATCTAAAGCTTCAGTATTTATGATGATGCCTTGCCACTC TACTCCTTATTATAGCCATGTCCACTACCCACTTCCAATGAGATTTCTCCAATGTCCCCC AGACCTGACTGGAAAAAGTGATTATCTTGTTGAAGCAGATATATTTTATCTAAATCCCTT AAAGTGGCTGTATAGAGAGTTTCACAATGATTCAACACTGCCTACTCACTTGATCATCTT CAATGTTTTGGAGAAGGAAATAAGTCCTTTCCTAATTTCACACAACTACGAACGAACTGC TGTTTTCTTCCACACTCACTTTCCGGAGCATTGGACTGGAAATCACATATACGTCTACGA ACGGAAGTTAAAAGGGAAACTCAACCAAAGATGAAATTCTGGACTGTGTTTAGATCTTTC TCAGAGAAATAAACACTGCTGAGCGGAAATATTCAGATGCTGCTTAACCATGCTAGTAAA TACTGGGTAATATCCATGGAACTAGCGAAAAACCACTATAAACTGCTTTACCAAATATCA CTACTGAGGAAATGTTTGAAAAAAATCACAAAATATAAAATCATATATTAATACAATGCT AGATATTTTAAATAAAGACCTTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr10 (38719531-38719662) | |
| 1-132, gnl|canFam2|chr30 (23726575-23726758) | |
| 1-132, gnl|danRer3|chrUn (2702238-2702394) | |
| 1-132, gnl|dasNov1|scaffold_52178 (4156-4337) | |
| 1-132, gnl|echTel1|scaffold_285550 (44204-44387) | |
| 1-132, gnl|fr1|chrUn (230808313-230808134) | |
| 1-132, gnl|galGal2|chr10 (8467355-8467182) | |
| 1-132, gnl|hg17|chr15 (53413337-53413518) | |
| 1-132, gnl|Hg17|chr15 (53413366-53413497) | |
| 1-132, gnl|loxAfr1|scaffold_22153 (28137-27954) | |
| 1-132, gnl|mm7|chr9 (73062229-73062045) | |
| 1-132, gnl|Mm7|chr9 (73062196-73062065) | |
| 1-132, gnl|monDom2|scaffold_12 (32941495-32941678) | |
| 1-132, gnl|oryCun1|scaffold_187747 (93825-94011) | |
| 1-132, gnl|panTro1|chr16 (53751830-53752011) | |
| 1-132, gnl|rheMac2|chr7 (33677760-33677941) | |
| 1-132, gnl|rn3|chr8 (77800888-77800704) | |
| 1-132, gnl|tetNig1|chr5 (5261449-5261605) | |
| 461-675, gnl|bosTau2|chr10 (38730494-38730708) | |
| 461-675, gnl|canFam2|chr30 (23743473-23743702) | |
| 461-675, gnl|danRer3|chrUn (2708467-2708693) | |
| 461-675, gnl|dasNov1|scaffold_231945 (124-347) | |
| 461-675, gnl|echTel1|scaffold_319608 (50910-51139) | |
| 461-675, gnl|fr1|chrUn (230807475-230807241) | |
| 461-675, gnl|galGal2|chr10 (8463319-8463093) | |
| 461-675, gnl|hg17|chr15 (53430178-53430407) | |
| 461-675, gnl|Hg17|chr15 (53430188-53430402) | |
| 461-675, gnl|loxAfr1|scaffold_127802 (3372-3158) | |
| 461-675, gnl|mm7|chr9 (73050595-73050366) | |
| 461-675, gnl|Mm7|chr9 (73050583-73050369) | |
| 461-675, gnl|monDom2|scaffold_12 (32958680-32958898) | |
| 461-675, gnl|oryCun1|scaffold_187747 (112075-112304) | |
| 461-675, gnl|panTro1|chr16 (53768749-53768978) | |
| 461-675, gnl|rheMac2|chr7 (33698433-33698662) | |
| 461-675, gnl|rn3|chr8 (77788643-77788414) | |
| 461-675, gnl|tetNig1|chr5 (5262227-5262462) | |
| 461-675, gnl|xenTro1|scaffold_1255 (83464-83240) | |
| 855-1224, gnl|bosTau2|chr10 (38732883-38733245) | |
| 855-1224, gnl|Hg17|chr15 (53434774-53435128) | |
| 855-1224, gnl|Mm7|chr9 (73048796-73048496) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr10 (38719531-38719662) | |
| 1-132, gnl|canFam2|chr30 (23726575-23726758) | |
| 1-132, gnl|danRer3|chrUn (2702238-2702394) | |
| 1-132, gnl|dasNov1|scaffold_52178 (4156-4337) | |
| 1-132, gnl|echTel1|scaffold_285550 (44204-44387) | |
| 1-132, gnl|fr1|chrUn (230808313-230808134) | |
| 1-132, gnl|galGal2|chr10 (8467355-8467182) | |
| 1-132, gnl|hg17|chr15 (53413337-53413518) | |
| 1-132, gnl|Hg17|chr15 (53413366-53413497) | |
| 1-132, gnl|loxAfr1|scaffold_22153 (28137-27954) | |
| 1-132, gnl|mm7|chr9 (73062229-73062045) | |
| 1-132, gnl|Mm7|chr9 (73062196-73062065) | |
| 1-132, gnl|monDom2|scaffold_12 (32941495-32941678) | |
| 1-132, gnl|oryCun1|scaffold_187747 (93825-94011) | |
| 1-132, gnl|panTro1|chr16 (53751830-53752011) | |
| 1-132, gnl|rheMac2|chr7 (33677760-33677941) | |
| 1-132, gnl|rn3|chr8 (77800888-77800704) | |
| 1-132, gnl|tetNig1|chr5 (5261449-5261605) | |
| 461-675, gnl|bosTau2|chr10 (38730494-38730708) | |
| 461-675, gnl|canFam2|chr30 (23743473-23743702) | |
| 461-675, gnl|danRer3|chrUn (2708467-2708693) | |
| 461-675, gnl|dasNov1|scaffold_231945 (124-347) | |
| 461-675, gnl|echTel1|scaffold_319608 (50910-51139) | |
| 461-675, gnl|fr1|chrUn (230807475-230807241) | |
| 461-675, gnl|galGal2|chr10 (8463319-8463093) | |
| 461-675, gnl|hg17|chr15 (53430178-53430407) | |
| 461-675, gnl|Hg17|chr15 (53430188-53430402) | |
| 461-675, gnl|loxAfr1|scaffold_127802 (3372-3158) | |
| 461-675, gnl|mm7|chr9 (73050595-73050366) | |
| 461-675, gnl|Mm7|chr9 (73050583-73050369) | |
| 461-675, gnl|monDom2|scaffold_12 (32958680-32958898) | |
| 461-675, gnl|oryCun1|scaffold_187747 (112075-112304) | |
| 461-675, gnl|panTro1|chr16 (53768749-53768978) | |
| 461-675, gnl|rheMac2|chr7 (33698433-33698662) | |
| 461-675, gnl|rn3|chr8 (77788643-77788414) | |
| 461-675, gnl|tetNig1|chr5 (5262227-5262462) | |
| 461-675, gnl|xenTro1|scaffold_1255 (83464-83240) | |
| 855-1224, gnl|bosTau2|chr10 (38732883-38733245) | |
| 855-1224, gnl|Hg17|chr15 (53434774-53435128) | |
| 855-1224, gnl|Mm7|chr9 (73048796-73048496) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ton (0.1755) | |
| nco (0.161734) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| spc (0.113366) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| nco (0.161734) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| spc (0.113366) |