Non-Coding RNA Search

Ss1.1-rspc007_e15.5

Sequence:


               
               GCATGGTAACCCAGATTTCATGTGCACGGTTTCCCTTTAGCCCACTGCCCAAATTTCACA
CACCCTTCACCCTTTGTCCCCTTTGTAAAAGGAGTGGTATCTGTTTTGAGCTGCCAATTC
AGATGATCAGAAATGCTGCTCTCCTCAGTATTGTCTTGTTAAATAGACATTTGGAACTTT
GGCATGAGAAGCCCAAAGGAAGAGGTGAATGACATGTGGTATATATTCAATGAGAGTGAA
ATATTTATGCTCATATACTTTCTGGCTCTCAGAATAAGTTAATAAGCTTTTTATGCCATG
GGGCTGCTGCATATTTTATCTGAAGTTAAAAGAAAATTTGGGCATTTTTAGATTGTGATA
ATGTGTTGTTGTTTTTTTAACTGTTAAATATGATTTCTGATATTTATCTAAGAACTGGAG
TGTTCTTTAAATTTATTGAAACAGTGTTGTTGGAGGAAGGGAAAACTGCACTGTTTGCCA
TTACACCAGTCATACGTGTGCGTGTCAGGTCGCCCACTCTCTCAGGCATCAGTACCCGCC
TCATAGCTTTACACATTTTGATGGGGAATACTGCAGCATCCTCAGGACTGACATCTGGGA
AAGGCTCAAATCCACTTACTGCTCCTTGCTTGTTGACTTTGTTTTAAAATATTGTGCCTG
GTGTCAACTTTTAAGCAACAGCACTGCCTAAAAGCAAGCAGAGAACAGAATCCCAGCACC
ATTCTATAGGCAACTTTTTAGAATTCAAATATAGTAAATCTGTTCAAGATTTATGATGTT
TTATGTAAAAAAAAATTTTGTACAACGTAGCTGAATATTTTTGTTTCATTTCTTTGATGT
AAGGCGTGTGAACGTTCGTTCGAATATCACATGTTAAAGTCAGGTATGGCACAATGGGTT
CTGAGACCAGCTTTTCCTCCCTCCCATTTGCCTTGTTCCAAGCTCGCTCTTTTCAAATTA
TTTTTCTGATATCCATAGGCAGATATTTAATTTTACTAATAAGCATCCTGTGTGAATGTA
TTAAAGAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGGTAACCCAGATTTCATGTGCACGGTTTCCCTTTAGCCCACTGCCCAAATTTCACA
CACCCTTCACCCTTTGTCCCCTTTGTAAAAGGAGTGGTATCTGTTTTGAGCTGCCAATTC
AGATGATCAGAAATGCTGCTCTCCTCAGTATTGTCTTGTTAAATAGACATTTGGAACTTT
GGCATGAGAAGCCCAAAGGAAGAGGTGAATGACATGTGGTATATATTCAATGAGAGTGAA
ATATTTATGCTCATATACTTTCTGGCTCTCAGAATAAGTTAATAAGCTTTTTATGCCATG
GGGCTGCTGCATATTTTATCTGAAGTTAAAAGAAAATTTGGGCATTTTTAGATTGTGATA
ATGTGTTGTTGTTTTTTTAACTGTTAAATATGATTTCTGATATTTATCTAAGAACTGGAG
TGTTCTTTAAATTTATTGAAACAGTGTTGTTGGAGGAAGGGAAAACTGCACTGTTTGCCA
TTACACCAGTCATACGTGTGCGTGTCAGGTCGCCCACTCTCTCAGGCATCAGTACCCGCC
TCATAGCTTTACACATTTTGATGGGGAATACTGCAGCATCCTCAGGACTGACATCTGGGA
AAGGCTCAAATCCACTTACTGCTCCTTGCTTGTTGACTTTGTTTTAAAATATTGTGCCTG
GTGTCAACTTTTAAGCAACAGCACTGCCTAAAAGCAAGCAGAGAACAGAATCCCAGCACC
ATTCTATAGGCAACTTTTTAGAATTCAAATATAGTAAATCTGTTCAAGATTTATGATGTT
TTATGTAAAAAAAAATTTTGTACAACGTAGCTGAATATTTTTGTTTCATTTCTTTGATGT
AAGGCGTGTGAACGTTCGTTCGAATATCACATGTTAAAGTCAGGTATGGCACAATGGGTT
CTGAGACCAGCTTTTCCTCCCTCCCATTTGCCTTGTTCCAAGCTCGCTCTTTTCAAATTA
TTTTTCTGATATCCATAGGCAGATATTTAATTTTACTAATAAGCATCCTGTGTGAATGTA
TTAAAGAAGCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.922845
               

               
               668-938, - strand, RNAz p=0.886986

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.922845
               

               
               668-938, - strand, RNAz p=0.886986

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               827-915, + strand, RNAmicro p=0.969778
               

               
               103-198, + strand, RNAmicro p=0.918807

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               827-915, + strand, RNAmicro p=0.969778
               

               
               103-198, + strand, RNAmicro p=0.918807

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1032, gnl|bosTau2|chr6 (50552887-50551856)
               

               
               1-1032, gnl|Hg17|chr4 (78996159-78995127)
               

               
               1-1032, gnl|Mm7|chr5 (95287846-95286828)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr6 (50552887-50551856)
               

               
               1-1032, gnl|Hg17|chr4 (78996159-78995127)
               

               
               1-1032, gnl|Mm7|chr5 (95287846-95286828)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               cbe (0.478469)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               nco (0.161734)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               nco (0.161734)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-119, - strand, RNAz p=0.922845
	668-938, - strand, RNAz p=0.886986

	827-915, + strand, RNAmicro p=0.969778
	103-198, + strand, RNAmicro p=0.918807

	1-1032, gnl\|bosTau2\|chr6 (50552887-50551856)
	1-1032, gnl\|Hg17\|chr4 (78996159-78995127)
	1-1032, gnl\|Mm7\|chr5 (95287846-95286828)

	cbe (0.478469)
	gul (0.355177)
	lnt (0.284616)
	mgp (0.230681)
	cmu (0.186393)
	nco (0.161734)
	kid (0.129735)
	sug (0.127291)
	spc (0.113366)
	jej (0.0989218)