Non-Coding RNA Search

Ss1.1-rspc007_l9.5

Sequence:


               
               CCTGGCTCCAGCAAACCTTCACCAATTTACATCAGTTCCTATTCCTCACCAGCAAGAGAA
CAAAATAGACGGCTACAGCATCAACAGCTGTATTATAGTCAAGATGACTCCACCAGAAAG
AACTTTGATGCATACAGATTGTATTTGCAGTCTCCTCATAGCTATGAAGATCCTTATTTT
GATGACCGAGTTCACTTTCCAGCCTCTACTGATTATTCAACACAGTATGGACTGAAATCG
ACTACAAATTACGTAGACTTTTATTCCACTAAACGACCTTCTTACAGAGCAGAACAGTAC
CCAGGGTCCCCGGACTCGTGGGTGTAGCATCGACATGCTCGGAGAGGAACTCTTTCTTTC
TAACCTTGTTTGGGTTGAGATGAGAAGTCCGTCTTGCTGATTTGCTGATGAAATGTGAAA
GTGACATGGAAGGAACGTGTGAAGAGCATATTTTTTTTCTTTTTTGAGGAATTATCAGGG
AAGTGAGGCAACCTTTGGGAGAGAGGACTTTCTAAGCTCTACTTAGGTGTTAGATCTAAT
CACTTGTAGATTCTATAGTCTGGTGAAGGTGTGGGCGATGTGATGAGAGGTTTGAGAAAT
GGGTGAAATGAGATGGGGGACGTGTAGGTCAAATCAAATTAAAGATGATTTTTTTAATGT
GAATAGAGTTATGTTCTGATAGTTTGTACAGAAAAAAAAATAATAAAATGGATGCCCTTC
ATGTTTTATTGCTATTACTAAATGTCAAGATTGTATGCTATTATGTCTTGTAAATTTCTT
TTGTTGGTGTAAATATGGAAATGCCACATTGGTTAAGTGCCATCATTTGTAATGCAGTGT
GTCATTTGAAAGGAGATTTGAAGAAACTGACAGCTTAAAAAAACAAATGGGAAACCCAAG
GAATTGTGAGGAGTTAAAAACAAACTACAACACCCTATGTTTTCAAAATGAATAGTGTAC
CCTTTGAAGCACAAATCCAGTCTGGTATAGCAGCGCCATGCCCATTCCCTGTCTCTTTCA
TAGGACACTTCACTGCCATTTTCTATGCACACAAAAGAAAAATAAATGTGGAAATTTCAT
CCTTGGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCTCCAGCAAACCTTCACCAATTTACATCAGTTCCTATTCCTCACCAGCAAGAGAA
CAAAATAGACGGCTACAGCATCAACAGCTGTATTATAGTCAAGATGACTCCACCAGAAAG
AACTTTGATGCATACAGATTGTATTTGCAGTCTCCTCATAGCTATGAAGATCCTTATTTT
GATGACCGAGTTCACTTTCCAGCCTCTACTGATTATTCAACACAGTATGGACTGAAATCG
ACTACAAATTACGTAGACTTTTATTCCACTAAACGACCTTCTTACAGAGCAGAACAGTAC
CCAGGGTCCCCGGACTCGTGGGTGTAGCATCGACATGCTCGGAGAGGAACTCTTTCTTTC
TAACCTTGTTTGGGTTGAGATGAGAAGTCCGTCTTGCTGATTTGCTGATGAAATGTGAAA
GTGACATGGAAGGAACGTGTGAAGAGCATATTTTTTTTCTTTTTTGAGGAATTATCAGGG
AAGTGAGGCAACCTTTGGGAGAGAGGACTTTCTAAGCTCTACTTAGGTGTTAGATCTAAT
CACTTGTAGATTCTATAGTCTGGTGAAGGTGTGGGCGATGTGATGAGAGGTTTGAGAAAT
GGGTGAAATGAGATGGGGGACGTGTAGGTCAAATCAAATTAAAGATGATTTTTTTAATGT
GAATAGAGTTATGTTCTGATAGTTTGTACAGAAAAAAAAATAATAAAATGGATGCCCTTC
ATGTTTTATTGCTATTACTAAATGTCAAGATTGTATGCTATTATGTCTTGTAAATTTCTT
TTGTTGGTGTAAATATGGAAATGCCACATTGGTTAAGTGCCATCATTTGTAATGCAGTGT
GTCATTTGAAAGGAGATTTGAAGAAACTGACAGCTTAAAAAAACAAATGGGAAACCCAAG
GAATTGTGAGGAGTTAAAAACAAACTACAACACCCTATGTTTTCAAAATGAATAGTGTAC
CCTTTGAAGCACAAATCCAGTCTGGTATAGCAGCGCCATGCCCATTCCCTGTCTCTTTCA
TAGGACACTTCACTGCCATTTTCTATGCACACAAAAGAAAAATAAATGTGGAAATTTCAT
CCTTGGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12861964|dbj|BAB32313.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12861964|dbj|BAB32313.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               390-494, + strand, RNAz p=0.688912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-494, + strand, RNAz p=0.688912

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               75-1089, gnl|bosTau2|chr2 (27584719-27585733)
               

               
               75-1089, gnl|Hg17|chr2 (159362444-159363448)
               

               
               75-1089, gnl|Mm7|chr2 (59284748-59285757)
               


               
               798-1085, gnl|bosTau2|chr23 (34636180-34635892)
               

               
               798-1085, gnl|Hg17|chr2 (159363158-159363444)
               

               
               798-1085, gnl|Mm7|chr2 (59285476-59285753)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-1089, gnl|bosTau2|chr2 (27584719-27585733)
               

               
               75-1089, gnl|Hg17|chr2 (159362444-159363448)
               

               
               75-1089, gnl|Mm7|chr2 (59284748-59285757)
               


               
               798-1085, gnl|bosTau2|chr23 (34636180-34635892)
               

               
               798-1085, gnl|Hg17|chr2 (159363158-159363444)
               

               
               798-1085, gnl|Mm7|chr2 (59285476-59285753)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               spc (2.15395)
               

               
               cbe (0.717703)
               

               
               kid (0.518941)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (2.15395)
               

               
               cbe (0.717703)
               

               
               kid (0.518941)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	75-1089, gnl\|bosTau2\|chr2 (27584719-27585733)
	75-1089, gnl\|Hg17\|chr2 (159362444-159363448)
	75-1089, gnl\|Mm7\|chr2 (59284748-59285757)

	798-1085, gnl\|bosTau2\|chr23 (34636180-34635892)
	798-1085, gnl\|Hg17\|chr2 (159363158-159363444)
	798-1085, gnl\|Mm7\|chr2 (59285476-59285753)

	spc (2.15395)
	cbe (0.717703)
	kid (0.518941)
	mgp (0.461361)
	amn (0.417711)
	lyg (0.399308)
	fcc (0.39557)
	fco (0.314416)
	fat (0.294855)
	hea (0.204499)
	gul (0.177588)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	bfe (0.149858)
	csk (0.140746)
	ret (0.128733)
	thg (0.126791)