Non-Coding RNA Search

Ss1.1-rspc007_m13.5

Sequence:


               
               CTTGATGAGGAGTTGACCATTATCTTTGACATCTGCAACCCTGTTCAGGCATTTGACCTG
CTGAAGAAATAGAATTCATGCTACCTTGACTGCCAGGGAAAGTAAAACTTTGTAAAATAT
GATAAGGCAACCTGTTCCTTGTCCTTTGTCTTGTGTTCTTCAATGATTATTATACCTATT
ATTGGTCTACTATTACAGGGTGGTTTTTCCTCCATTGACCTCATCTAACTGTGAATTTGG
GTCATGAATGAAATCTGAAGAACTGCCAGGTACTGAGTGAGGATTAAGAGGTATGTGCTG
CCACCCTGTGCTTGTCTTCTCCATCTCCAGGGAATTTTTAAAGTGCCCAGGTACTAAACA
CACTTCTGTGTGAGGTTAAATGCCTACTTCCTTGACCCCCATTCAGAAGTAACACCTTTT
GTCCTACCAAAGGTGCTTTGATATCCACCTACACTATTGAAAAGTTGCCTGGAGATTCTG
AAAGAATTGGCTCTACTTGTTGAAATTGTCATGCCAACTGCTGGAGGTGACACTGTTCCA
GGCATTATTATATAAAGAAGTCTTAGTTGCCAAGCCCTGGCCAGGTTTGGGATGTGAACA
TAAATAAATTGGCCAGGATAGTCCTAGATGCAGTAGCCTTACCTCTAAAATCTTGCCACA
GAGTTACTTGAAGCTAGACAAAGAAGCAAGTTTGAATTAAATACTTGGTCCATGATTGTG
ATTAAGAGCAAACTCCATGGAGTATGATTAATTCTGTTTGAGAAATTGCTGTGTATTGAT
AACACACTGGACTGGAAGACACGATTTGAATTCCAGTCCTGATGGTGCCACTATATAAGT
AGTTTTGTAATCATAAGCAAGTCATTTAACTTCTCTTTATCTTTCTTATTTGTAAAGTTA
GGGTGGGGAATGAAGTAGTTGATTTGTAAACTGTCGGCTCTAAAATTGTATGACTAAATT
TGCAGAATATATGCCCCACTTGTGAAATAGAATATTGTACCCAGAATTTCTTTTCAGCAA
CTACCTCAACATACAAGCCAAGTGTGACCTACACCAACACCCGAGCCATTAATTTGAGAT
GCCATGAGTACAGAAGGTAAACTGAAGGCTAACACCATTTTGGTTTTTGTTTATTTTTAG
AGTTGTGTAGACTTAAATCTGTTTAGATTAAACAGATTTTTCTTAGACTTCTTTCTTTGT
GTGGAAGGATTATTTTTGGAGGTATCGGAGAAAAGATTAAGACAGGGTCAGAAGAATGGG
GTCCATTTTTTCTTTCTTCCATAATCTCTGTAGTCACAGATGGAATTCCATACATGCATC
AGCAGCTGGAGAGGACCCGAATTTCAAGCTACTCAGAAACTGCTAATTTTTTGCTTAACT
AAAGAATGCTCATCTTTTTGGAAAGTCTAATCTTCTTATATAAGAATATACTTTTTACAT
TCCAAGTTGTTTAAATTAAACTGTTTGAATAAAGAACATACATGGAAAAAAAAAAAAAAA
AAAAAAAAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGATGAGGAGTTGACCATTATCTTTGACATCTGCAACCCTGTTCAGGCATTTGACCTG
CTGAAGAAATAGAATTCATGCTACCTTGACTGCCAGGGAAAGTAAAACTTTGTAAAATAT
GATAAGGCAACCTGTTCCTTGTCCTTTGTCTTGTGTTCTTCAATGATTATTATACCTATT
ATTGGTCTACTATTACAGGGTGGTTTTTCCTCCATTGACCTCATCTAACTGTGAATTTGG
GTCATGAATGAAATCTGAAGAACTGCCAGGTACTGAGTGAGGATTAAGAGGTATGTGCTG
CCACCCTGTGCTTGTCTTCTCCATCTCCAGGGAATTTTTAAAGTGCCCAGGTACTAAACA
CACTTCTGTGTGAGGTTAAATGCCTACTTCCTTGACCCCCATTCAGAAGTAACACCTTTT
GTCCTACCAAAGGTGCTTTGATATCCACCTACACTATTGAAAAGTTGCCTGGAGATTCTG
AAAGAATTGGCTCTACTTGTTGAAATTGTCATGCCAACTGCTGGAGGTGACACTGTTCCA
GGCATTATTATATAAAGAAGTCTTAGTTGCCAAGCCCTGGCCAGGTTTGGGATGTGAACA
TAAATAAATTGGCCAGGATAGTCCTAGATGCAGTAGCCTTACCTCTAAAATCTTGCCACA
GAGTTACTTGAAGCTAGACAAAGAAGCAAGTTTGAATTAAATACTTGGTCCATGATTGTG
ATTAAGAGCAAACTCCATGGAGTATGATTAATTCTGTTTGAGAAATTGCTGTGTATTGAT
AACACACTGGACTGGAAGACACGATTTGAATTCCAGTCCTGATGGTGCCACTATATAAGT
AGTTTTGTAATCATAAGCAAGTCATTTAACTTCTCTTTATCTTTCTTATTTGTAAAGTTA
GGGTGGGGAATGAAGTAGTTGATTTGTAAACTGTCGGCTCTAAAATTGTATGACTAAATT
TGCAGAATATATGCCCCACTTGTGAAATAGAATATTGTACCCAGAATTTCTTTTCAGCAA
CTACCTCAACATACAAGCCAAGTGTGACCTACACCAACACCCGAGCCATTAATTTGAGAT
GCCATGAGTACAGAAGGTAAACTGAAGGCTAACACCATTTTGGTTTTTGTTTATTTTTAG
AGTTGTGTAGACTTAAATCTGTTTAGATTAAACAGATTTTTCTTAGACTTCTTTCTTTGT
GTGGAAGGATTATTTTTGGAGGTATCGGAGAAAAGATTAAGACAGGGTCAGAAGAATGGG
GTCCATTTTTTCTTTCTTCCATAATCTCTGTAGTCACAGATGGAATTCCATACATGCATC
AGCAGCTGGAGAGGACCCGAATTTCAAGCTACTCAGAAACTGCTAATTTTTTGCTTAACT
AAAGAATGCTCATCTTTTTGGAAAGTCTAATCTTCTTATATAAGAATATACTTTTTACAT
TCCAAGTTGTTTAAATTAAACTGTTTGAATAAAGAACATACATGGAAAAAAAAAAAAAAA
AAAAAAAAAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               773-880, + strand, RNAz p=0.83155

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               773-880, + strand, RNAz p=0.83155

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC032525, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC032525, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1248, gnl|bosTau2|chr11 (12508380-12509630)
               

               
               1-1248, gnl|Hg17|chr2 (32359285-32360539)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1248, gnl|bosTau2|chr11 (12508380-12509630)
               

               
               1-1248, gnl|Hg17|chr2 (32359285-32360539)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	1-1248, gnl\|bosTau2\|chr11 (12508380-12509630)
	1-1248, gnl\|Hg17\|chr2 (32359285-32360539)

	sug (0.254582)
	spc (0.226732)
	fli (0.202881)
	cmu (0.186393)
	cag (0.151194)
	pla (0.133672)
	lyg (0.133103)
	ret (0.128733)