Non-Coding RNA Search

Ss1.1-rspc008_b11.5

Sequence:


               
               TTTTCTTTAATAAGGGAATATATGCATGTAGAAAAAAACCTACTTAAAGTCTTCATTTAT
ATTCTTTTAAATCAGATCTTTATTTAATAACTTATATATGTTGTTGGAATGGTATACATT
TTTGCAGCCCTTTGTATTTTGTGGTAGTTTGAATTGTATCACTTCTAAACAGCAAACTTT
TTGTTTTCATTTTTTTTTTTAATTAGCAGATACCTGAAGTACTATTTTTGCAGGGTTTGC
ACAGGCCCTTAACTGTCTACTACTTTGATATAATCTATATACATCCTGTATGCTGAGCTG
GTAAAATACATTGTAAACTACATATTAAATATTTTATCTGCTTTTACAAGCGCAAGGGGC
AAAAATATATACGGTAGTCTCATTGATGACTGTAAAGTGAATTAACATTTGGTGATAATG
CCTAAGCTTTTTGACTCTGATATAAAAATTATAGTTCCCCTTCACTTTTGTCTTAACTTA
AAAGTGGCGTGTTTAAATTTTCTCATATACTTTACTTGAATTATTGCTGTTGTCACATTT
TTTGCCTCTGTAAATCCATCTGATGATTGAACAACAGCATTTGCCTTTTGGTTTGGATTT
TTTTTGTTGTTCTTTTGTTGGGGTTTTTGTTCTTTTGTTTTTTTGTTTTTGTTTTTTGGG
ATAAGAGATGACTTCTGATTTTGCTTTAGAATGGTTACCTTAGAAGTATTTGAGCGGAGC
ATGCTGAGTTTCACTTCTGCAACGGCTTTAGTTTTCTCTTAGGCTTTATATGAGATGGAT
TCACTGGTGTGAGAAGAAAGTTAGAAGAAGTCCCAGGTAGTAGCCACTCACCAAGACTCA
TTCATACAGCATGTTGGTGGTAGTTTCTGCTCCCGAGGAAGCACTTGTAGATCTTTTGTG
AGCAAGCTGTTTTTGTTCATTGCTTGCCAGAGATGAACACAGAAATTTTTGTTTCATTTT
ATAAGAGCTATCCTTCTAAGTTTCTTTGAAGGGACACATTTCATGTAATGCAGTTATAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTTTAATAAGGGAATATATGCATGTAGAAAAAAACCTACTTAAAGTCTTCATTTAT
ATTCTTTTAAATCAGATCTTTATTTAATAACTTATATATGTTGTTGGAATGGTATACATT
TTTGCAGCCCTTTGTATTTTGTGGTAGTTTGAATTGTATCACTTCTAAACAGCAAACTTT
TTGTTTTCATTTTTTTTTTTAATTAGCAGATACCTGAAGTACTATTTTTGCAGGGTTTGC
ACAGGCCCTTAACTGTCTACTACTTTGATATAATCTATATACATCCTGTATGCTGAGCTG
GTAAAATACATTGTAAACTACATATTAAATATTTTATCTGCTTTTACAAGCGCAAGGGGC
AAAAATATATACGGTAGTCTCATTGATGACTGTAAAGTGAATTAACATTTGGTGATAATG
CCTAAGCTTTTTGACTCTGATATAAAAATTATAGTTCCCCTTCACTTTTGTCTTAACTTA
AAAGTGGCGTGTTTAAATTTTCTCATATACTTTACTTGAATTATTGCTGTTGTCACATTT
TTTGCCTCTGTAAATCCATCTGATGATTGAACAACAGCATTTGCCTTTTGGTTTGGATTT
TTTTTGTTGTTCTTTTGTTGGGGTTTTTGTTCTTTTGTTTTTTTGTTTTTGTTTTTTGGG
ATAAGAGATGACTTCTGATTTTGCTTTAGAATGGTTACCTTAGAAGTATTTGAGCGGAGC
ATGCTGAGTTTCACTTCTGCAACGGCTTTAGTTTTCTCTTAGGCTTTATATGAGATGGAT
TCACTGGTGTGAGAAGAAAGTTAGAAGAAGTCCCAGGTAGTAGCCACTCACCAAGACTCA
TTCATACAGCATGTTGGTGGTAGTTTCTGCTCCCGAGGAAGCACTTGTAGATCTTTTGTG
AGCAAGCTGTTTTTGTTCATTGCTTGCCAGAGATGAACACAGAAATTTTTGTTTCATTTT
ATAAGAGCTATCCTTCTAAGTTTCTTTGAAGGGACACATTTCATGTAATGCAGTTATAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               511-621, - strand, RNAz p=0.698746
               

               
               858-1020, - strand, RNAz p=0.99937

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               511-621, - strand, RNAz p=0.698746
               

               
               858-1020, - strand, RNAz p=0.99937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1020, gnl|bosTau2|chrX (26707903-26708906)
               

               
               1-1020, gnl|Hg17|chr12 (70466293-70467237)
               

               
               1-1020, gnl|Mm7|chr10 (114796764-114795783)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chrX (26707903-26708906)
               

               
               1-1020, gnl|Hg17|chr12 (70466293-70467237)
               

               
               1-1020, gnl|Mm7|chr10 (114796764-114795783)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               spc (0.113366)

	511-621, - strand, RNAz p=0.698746
	858-1020, - strand, RNAz p=0.99937

	1-1020, gnl\|bosTau2\|chrX (26707903-26708906)
	1-1020, gnl\|Hg17\|chr12 (70466293-70467237)
	1-1020, gnl\|Mm7\|chr10 (114796764-114795783)