Non-Coding RNA Search

Ss1.1-rspc008_d12.5

Sequence:


               
               AGGGGAAGAGCTATGATGCTGCCA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------GCTTCGATCCCTAGCCAGGGAACTTCCATAAGCCAT
GGTACAGCCCTAAAAAATAAAAAAATAAAAAAATAAAAGAAAATAAAACTATGATGCCAG
CAGAAGTCAGAATGATGTGTCCAGGAGACAAAGAGTGTAGGCATCCTCTAGAAACCGAAA
AAGACAAGGGATGGATTTTCCCCTAGAACCTCTAGAAGGAACTCAGCCTTTGATTTTATT
TTTATAATTGAGGTATAGTTCATTTACAATGTTGTCTTGGTTTCAAGTGTACAGCAAAGC
AATTCAGTTATACATAGATAAGTGTATATGTACATACATATATATAATTCTTTTTCAGAT
TCTTTTCCATTAGAGGTTATTATGAGATATCGAGTATTAGTTTCCTGTGCTATACAGTAG
GTTCTAGTTCTTTATCTGTTTTATACATATTCTATATATATGGATACGTTAATCCCAAAC
TCCTAATTTATCTCCCCCTCCTTTCCGCTTTGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGAAGAGCTATGATGCTGCCA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------GCTTCGATCCCTAGCCAGGGAACTTCCATAAGCCAT
GGTACAGCCCTAAAAAATAAAAAAATAAAAAAATAAAAGAAAATAAAACTATGATGCCAG
CAGAAGTCAGAATGATGTGTCCAGGAGACAAAGAGTGTAGGCATCCTCTAGAAACCGAAA
AAGACAAGGGATGGATTTTCCCCTAGAACCTCTAGAAGGAACTCAGCCTTTGATTTTATT
TTTATAATTGAGGTATAGTTCATTTACAATGTTGTCTTGGTTTCAAGTGTACAGCAAAGC
AATTCAGTTATACATAGATAAGTGTATATGTACATACATATATATAATTCTTTTTCAGAT
TCTTTTCCATTAGAGGTTATTATGAGATATCGAGTATTAGTTTCCTGTGCTATACAGTAG
GTTCTAGTTCTTTATCTGTTTTATACATATTCTATATATATGGATACGTTAATCCCAAAC
TCCTAATTTATCTCCCCCTCCTTTCCGCTTTGGTAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               215-516, gnl|bosTau2|chr10 (15319102-15318812)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-516, gnl|bosTau2|chr10 (15319102-15318812)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               pty (0.142714)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               spc (0.113366)