Ss1.1-rspc008_p18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGGAGCAAGAGCAGGAGCAGGAGACAGAGGGCTCCAGCATCACTGCCCAGAAGAGGT CCTGCAACACTGCTACCTGTGTGACCCATCGGCTGGCAGGCTTGCTGAGCAGATCTGGGG GTATGGTGAAGAGCAACTTTGTGCCCACTGATGTGGGCTCTGAAGCATTTGGCCGACGCC GCAGGGAGCTTCAGGAGCAGTGAAATGACTCCAGGGAAAAGGTTACCATGAAGCTGAACT CACCACTTCAATTAATTTCTGCTGACAACAACTTGGTGAGAAGGCCCCATGGAAGATATA ACATGTTTGCATCCTAATAGATATTGAAAAAAGCACCTTTGTCACTTGAAAGGAATGAAA CTGAATGCAAAATAAGCTAATTCCATATTTGTTGTGCATCTTTTTTATATTTGATTCTAT GTGCAGTAAATGCGATGGCATCTCTCATTAGCTTCTCTGGTAGCAAATTGGTTCTTTGAA AGCTGTCCTGTTGATCATGGCAGCTCTGCCAAATTTTAACATTAAATCACTGCCTCTGTG GCCTCTGGGGACACATGTAATGGTGATGCTGTGCTTTGTCTAAGAACATGATTGTATAAT TTGTTTAAGGAAATGTTAATATTGTGCCATTTGTGAACTTCATTAAGATTAAAAACATAT TTTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGGAGCAAGAGCAGGAGCAGGAGACAGAGGGCTCCAGCATCACTGCCCAGAAGAGGT CCTGCAACACTGCTACCTGTGTGACCCATCGGCTGGCAGGCTTGCTGAGCAGATCTGGGG GTATGGTGAAGAGCAACTTTGTGCCCACTGATGTGGGCTCTGAAGCATTTGGCCGACGCC GCAGGGAGCTTCAGGAGCAGTGAAATGACTCCAGGGAAAAGGTTACCATGAAGCTGAACT CACCACTTCAATTAATTTCTGCTGACAACAACTTGGTGAGAAGGCCCCATGGAAGATATA ACATGTTTGCATCCTAATAGATATTGAAAAAAGCACCTTTGTCACTTGAAAGGAATGAAA CTGAATGCAAAATAAGCTAATTCCATATTTGTTGTGCATCTTTTTTATATTTGATTCTAT GTGCAGTAAATGCGATGGCATCTCTCATTAGCTTCTCTGGTAGCAAATTGGTTCTTTGAA AGCTGTCCTGTTGATCATGGCAGCTCTGCCAAATTTTAACATTAAATCACTGCCTCTGTG GCCTCTGGGGACACATGTAATGGTGATGCTGTGCTTTGTCTAAGAACATGATTGTATAAT TTGTTTAAGGAAATGTTAATATTGTGCCATTTGTGAACTTCATTAAGATTAAAAACATAT TTTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 103-218, + strand, RNAz p=0.65961 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 103-218, + strand, RNAz p=0.65961 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 37-218, gnl|bosTau2|chr15 (22229821-22230005) | |
| 37-218, gnl|canFam2|chr21 (41108642-41108819) | |
| 37-218, gnl|danRer3|chr7 (17331310-17331140) | |
| 37-218, gnl|dasNov1|scaffold_18067 (27297-27470) | |
| 37-218, gnl|echTel1|scaffold_322117 (1460-1636) | |
| 37-218, gnl|fr1|chrUn (51563729-51563895) | |
| 37-218, gnl|galGal2|chr5 (8062840-8063001) | |
| 37-218, gnl|hg17|chr11 (15055369-15055546) | |
| 37-218, gnl|Hg17|chr11 (15055404-15055591) | |
| 37-218, gnl|loxAfr1|scaffold_18841 (34397-34574) | |
| 37-218, gnl|mm7|chr7 (110637999-110638181) | |
| 37-218, gnl|Mm7|chr7 (110638036-110638222) | |
| 37-218, gnl|monDom2|scaffold_10 (57106804-57106643) | |
| 37-218, gnl|oryCun1|scaffold_212239 (28423-28600) | |
| 37-218, gnl|panTro1|chr9 (15250531-15250707) | |
| 37-218, gnl|rheMac2|chr14 (56869430-56869253) | |
| 37-218, gnl|rn3|chr1 (172915844-172916021) | |
| 37-218, gnl|tetNig1|chr5 (6720155-6720329) | |
| 37-218, gnl|xenTro1|scaffold_914 (121269-121127) | |
| 220-668, gnl|bosTau2|chr15 (22230818-22231278) | |
| 220-668, gnl|Hg17|chr11 (15056203-15056659) | |
| 220-668, gnl|Mm7|chr7 (110638971-110639428) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-218, gnl|bosTau2|chr15 (22229821-22230005) | |
| 37-218, gnl|canFam2|chr21 (41108642-41108819) | |
| 37-218, gnl|danRer3|chr7 (17331310-17331140) | |
| 37-218, gnl|dasNov1|scaffold_18067 (27297-27470) | |
| 37-218, gnl|echTel1|scaffold_322117 (1460-1636) | |
| 37-218, gnl|fr1|chrUn (51563729-51563895) | |
| 37-218, gnl|galGal2|chr5 (8062840-8063001) | |
| 37-218, gnl|hg17|chr11 (15055369-15055546) | |
| 37-218, gnl|Hg17|chr11 (15055404-15055591) | |
| 37-218, gnl|loxAfr1|scaffold_18841 (34397-34574) | |
| 37-218, gnl|mm7|chr7 (110637999-110638181) | |
| 37-218, gnl|Mm7|chr7 (110638036-110638222) | |
| 37-218, gnl|monDom2|scaffold_10 (57106804-57106643) | |
| 37-218, gnl|oryCun1|scaffold_212239 (28423-28600) | |
| 37-218, gnl|panTro1|chr9 (15250531-15250707) | |
| 37-218, gnl|rheMac2|chr14 (56869430-56869253) | |
| 37-218, gnl|rn3|chr1 (172915844-172916021) | |
| 37-218, gnl|tetNig1|chr5 (6720155-6720329) | |
| 37-218, gnl|xenTro1|scaffold_914 (121269-121127) | |
| 220-668, gnl|bosTau2|chr15 (22230818-22231278) | |
| 220-668, gnl|Hg17|chr11 (15056203-15056659) | |
| 220-668, gnl|Mm7|chr7 (110638971-110639428) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.453463) |