Non-Coding RNA Search

Ss1.1-rspc009_e22.5

Sequence:


               
               CTTTACCTTATGTACTTTCACAGTAATAACTTTGACAGTTTAAACTCAGTGACTTTTCTG
AAGGTAATATGCATGTTATACTTCAGAATGAAGGCAGATTTAAAATAAGAAAGTCTGAGA
TCAAATAAAAGTGAGCAGTTGATAATTGTCTTGTTTATTCCAGAGATATCTTGAGAACTT
TAGTGGGATTTGAGGTATTTAATACTGCCTTGTCTGTACACCTCACCCTGCTGTGCAGAA
GGCAGAATGGGGCTCAGTGAACCACCTACTTTGGTAACTGCCAATTCTAAGTAGTTTTAT
GGCTTGGCTGTAGATAAACCATGACCAAAACATTTGTAGAGCTTTCTGGTCACTATTTAT
TCTTAAAGTCAATTTTACCAATCAGCGAAAAGGAGTTATTCAGGAATAGATGCAGTTCTT
TAATACCCTCATGACATTGACATAGAAGGCCACATATTCCTTGTTTGAGATTCTGCATGC
CTTTTGTGCTTAACTGAATCAATTTTTTTCCATTGTGTTCTCGATTATTTCACACATGTA
ACACTGGTTTTGTATTGAAATTATGCAGTATTATTTGAAACTGTGTATTTATTTCAACTC
ATGTCACTGGAGTTTATTAATGATTGGCTCAACTGGTAAGTAAACTATGTATGTTAAAGC
AATAAAAATGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTACCTTATGTACTTTCACAGTAATAACTTTGACAGTTTAAACTCAGTGACTTTTCTG
AAGGTAATATGCATGTTATACTTCAGAATGAAGGCAGATTTAAAATAAGAAAGTCTGAGA
TCAAATAAAAGTGAGCAGTTGATAATTGTCTTGTTTATTCCAGAGATATCTTGAGAACTT
TAGTGGGATTTGAGGTATTTAATACTGCCTTGTCTGTACACCTCACCCTGCTGTGCAGAA
GGCAGAATGGGGCTCAGTGAACCACCTACTTTGGTAACTGCCAATTCTAAGTAGTTTTAT
GGCTTGGCTGTAGATAAACCATGACCAAAACATTTGTAGAGCTTTCTGGTCACTATTTAT
TCTTAAAGTCAATTTTACCAATCAGCGAAAAGGAGTTATTCAGGAATAGATGCAGTTCTT
TAATACCCTCATGACATTGACATAGAAGGCCACATATTCCTTGTTTGAGATTCTGCATGC
CTTTTGTGCTTAACTGAATCAATTTTTTTCCATTGTGTTCTCGATTATTTCACACATGTA
ACACTGGTTTTGTATTGAAATTATGCAGTATTATTTGAAACTGTGTATTTATTTCAACTC
ATGTCACTGGAGTTTATTAATGATTGGCTCAACTGGTAAGTAAACTATGTATGTTAAAGC
AATAAAAATGAAAAAAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-674, gnl|bosTau2|chr28 (15559071-15559742)
               

               
               1-674, gnl|canFam2|chr4 (20569187-20570097)
               

               
               1-674, gnl|dasNov1|scaffold_13355 (42205-43151)
               

               
               1-674, gnl|hg17|chr10 (67342225-67343137)
               

               
               1-674, gnl|Hg17|chr10 (67342972-67342300)
               

               
               1-674, gnl|mm7|chr10 (64533359-64532389)
               

               
               1-674, gnl|Mm7|chr10 (64532559-64533286)
               

               
               1-674, gnl|monDom2|scaffold_67 (6676593-6677570)
               

               
               1-674, gnl|oryCun1|scaffold_203203 (35551-36434)
               

               
               1-674, gnl|panTro1|chr8 (68323596-68324508)
               

               
               1-674, gnl|rheMac2|chr9 (71347537-71346620)
               

               
               1-674, gnl|rn3|chr20 (24640579-24641526)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-674, gnl|bosTau2|chr28 (15559071-15559742)
               

               
               1-674, gnl|canFam2|chr4 (20569187-20570097)
               

               
               1-674, gnl|dasNov1|scaffold_13355 (42205-43151)
               

               
               1-674, gnl|hg17|chr10 (67342225-67343137)
               

               
               1-674, gnl|Hg17|chr10 (67342972-67342300)
               

               
               1-674, gnl|mm7|chr10 (64533359-64532389)
               

               
               1-674, gnl|Mm7|chr10 (64532559-64533286)
               

               
               1-674, gnl|monDom2|scaffold_67 (6676593-6677570)
               

               
               1-674, gnl|oryCun1|scaffold_203203 (35551-36434)
               

               
               1-674, gnl|panTro1|chr8 (68323596-68324508)
               

               
               1-674, gnl|rheMac2|chr9 (71347537-71346620)
               

               
               1-674, gnl|rn3|chr20 (24640579-24641526)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spc (0.226732)
               

               
               isp (0.150376)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               isp (0.150376)

	1-674, gnl\|bosTau2\|chr28 (15559071-15559742)
	1-674, gnl\|canFam2\|chr4 (20569187-20570097)
	1-674, gnl\|dasNov1\|scaffold_13355 (42205-43151)
	1-674, gnl\|hg17\|chr10 (67342225-67343137)
	1-674, gnl\|Hg17\|chr10 (67342972-67342300)
	1-674, gnl\|mm7\|chr10 (64533359-64532389)
	1-674, gnl\|Mm7\|chr10 (64532559-64533286)
	1-674, gnl\|monDom2\|scaffold_67 (6676593-6677570)
	1-674, gnl\|oryCun1\|scaffold_203203 (35551-36434)
	1-674, gnl\|panTro1\|chr8 (68323596-68324508)
	1-674, gnl\|rheMac2\|chr9 (71347537-71346620)
	1-674, gnl\|rn3\|chr20 (24640579-24641526)