Ss1.1-rspc009_i4.5.5
|
TTTATTCATCATTGGCTCTGGCCCATCCTCAGTGGGGCTTTGACATTATCAGTAACTGGT
CACTGTCAGCAAAATCACATTTAATCACACAACACCTATCTAGGTTACATAAAAACAGGC
AGAAATGCCACTGTTACAGTTTCTTGGCTCTACATAAGCAAAGACTGTCCTGTCCTGTCT
TTGTGGTGACTGAACTTAGAATGCCCTCCCTTGGAAAAGTACCTGTACTAGGAGCTAGGT
GACAAAAGGGGGTATTAGGCTTGAGTCCATATATATCATGAACAGTTCATGGGAAGCATT
TTTCTTAGAAGGTCTTACCTGACATTGGCCTCCTTCTGGCCTTCACTTGTGAGAATCCTG
GAACTAGAGTTTGGGTTAAGAAACTTTTTGTAGAAAATACTGTTGAAAACATCTCAGAGG
CCACTGAACAGTTTTAAAATTCCACTTAAAATGCTAGATAATCCAGTGCTTGTGTCGCAA
CTCTGTGTTGTTCTCAAGAGTCCCGGGTTCTTTCCATCTTTCCCCTCTGGGATCCTTATC
ACGTTGACTTTTTGTCCTCATAGTTGTTTCCTCAGTGAGTTCAGTGTGGCTTGTTGCTGC
TCCAGACATTTCTGTCCCAATCAAAGGCTGGAAGTAGGGAGTAAACAAGTTTTCTCCTTT
CAAGAGAGAATTTGGGGAGAAAATCGTTCTCAAAAGTCCCTTGCAGGAGTTCCCTTTGTG
GTTCAATGGGTTAAGACCCGACCATTGTCTCTGTGAGGATGCAGGTTTGATCCCTGGCCT
GGTTCAGTGGGTTAAGGATCTGGCATTGCTGTCAGCTGCAGCACATGTCACAGTTGCAGT
TCCTATTCGACCCCGGCCCTGGAACTTCCGTGTGCCACAGGTGCGCCCATAAAAACAAAC
AAAAATGTCCCTCACAGATTTTTTTTTTTCCTTACATCTCATTAGAAGGGACTGATTCAC
AAGGGAGCCTGGGAAACCTGGAAAAGGGGAAAGGAGTTGGCATTGCCTGAGCAGGACACA
TTTTTCTCCCATAATTAAATGAGGGCTCTTTTAGGAAGGAAGAAGTGAGGAATGAATGGC
TGTGGGTGTGCAGCAAGTCATGCCTGCCACATGTTGTGAAACCTCAAGTCATTTGTCAGT
CTATATAAAGAATGTACCCCAGAGACCTATCTTGTATCTGCCTTATGTCTGTTATGATGG
AAGTTTTCTCCTGTTCTATTGCTAAATAAACTTTGTGGACTGCTAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTATTCATCATTGGCTCTGGCCCATCCTCAGTGGGGCTTTGACATTATCAGTAACTGGT
CACTGTCAGCAAAATCACATTTAATCACACAACACCTATCTAGGTTACATAAAAACAGGC
AGAAATGCCACTGTTACAGTTTCTTGGCTCTACATAAGCAAAGACTGTCCTGTCCTGTCT
TTGTGGTGACTGAACTTAGAATGCCCTCCCTTGGAAAAGTACCTGTACTAGGAGCTAGGT
GACAAAAGGGGGTATTAGGCTTGAGTCCATATATATCATGAACAGTTCATGGGAAGCATT
TTTCTTAGAAGGTCTTACCTGACATTGGCCTCCTTCTGGCCTTCACTTGTGAGAATCCTG
GAACTAGAGTTTGGGTTAAGAAACTTTTTGTAGAAAATACTGTTGAAAACATCTCAGAGG
CCACTGAACAGTTTTAAAATTCCACTTAAAATGCTAGATAATCCAGTGCTTGTGTCGCAA
CTCTGTGTTGTTCTCAAGAGTCCCGGGTTCTTTCCATCTTTCCCCTCTGGGATCCTTATC
ACGTTGACTTTTTGTCCTCATAGTTGTTTCCTCAGTGAGTTCAGTGTGGCTTGTTGCTGC
TCCAGACATTTCTGTCCCAATCAAAGGCTGGAAGTAGGGAGTAAACAAGTTTTCTCCTTT
CAAGAGAGAATTTGGGGAGAAAATCGTTCTCAAAAGTCCCTTGCAGGAGTTCCCTTTGTG
GTTCAATGGGTTAAGACCCGACCATTGTCTCTGTGAGGATGCAGGTTTGATCCCTGGCCT
GGTTCAGTGGGTTAAGGATCTGGCATTGCTGTCAGCTGCAGCACATGTCACAGTTGCAGT
TCCTATTCGACCCCGGCCCTGGAACTTCCGTGTGCCACAGGTGCGCCCATAAAAACAAAC
AAAAATGTCCCTCACAGATTTTTTTTTTTCCTTACATCTCATTAGAAGGGACTGATTCAC
AAGGGAGCCTGGGAAACCTGGAAAAGGGGAAAGGAGTTGGCATTGCCTGAGCAGGACACA
TTTTTCTCCCATAATTAAATGAGGGCTCTTTTAGGAAGGAAGAAGTGAGGAATGAATGGC
TGTGGGTGTGCAGCAAGTCATGCCTGCCACATGTTGTGAAACCTCAAGTCATTTGTCAGT
CTATATAAAGAATGTACCCCAGAGACCTATCTTGTATCTGCCTTATGTCTGTTATGATGG
AAGTTTTCTCCTGTTCTATTGCTAAATAAACTTTGTGGACTGCTAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
4-701, gnl|bosTau2|chr16 (45759521-45758813) |
|
4-701, gnl|Hg17|chr1 (176565033-176564168) |
|
4-701, gnl|Mm7|chr1 (156014775-156015433) |
| |
|
953-1245, gnl|bosTau2|chr16 (45758763-45758480) |
|
953-1245, gnl|canFam2|chr7 (16392837-16393035) |
|
953-1245, gnl|dasNov1|scaffold_22594 (2915-2717) |
|
953-1245, gnl|echTel1|scaffold_262822 (5828-5989) |
|
953-1245, gnl|hg17|chr1 (176563234-176563439) |
|
953-1245, gnl|Hg17|chr1 (176564132-176563235) |
|
953-1245, gnl|loxAfr1|scaffold_23466 (18242-18430) |
|
953-1245, gnl|mm7|chr1 (156015747-156015586) |
|
953-1245, gnl|Mm7|chr1 (156015466-156015744) |
|
953-1245, gnl|panTro1|chr1_random (34149375-34149580) |
|
953-1245, gnl|rheMac2|chr1 (190872028-190871823) |
|
953-1245, gnl|rn3|chr13 (71102980-71102850) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-701, gnl|bosTau2|chr16 (45759521-45758813) |
|
4-701, gnl|Hg17|chr1 (176565033-176564168) |
|
4-701, gnl|Mm7|chr1 (156014775-156015433) |
| |
|
953-1245, gnl|bosTau2|chr16 (45758763-45758480) |
|
953-1245, gnl|canFam2|chr7 (16392837-16393035) |
|
953-1245, gnl|dasNov1|scaffold_22594 (2915-2717) |
|
953-1245, gnl|echTel1|scaffold_262822 (5828-5989) |
|
953-1245, gnl|hg17|chr1 (176563234-176563439) |
|
953-1245, gnl|Hg17|chr1 (176564132-176563235) |
|
953-1245, gnl|loxAfr1|scaffold_23466 (18242-18430) |
|
953-1245, gnl|mm7|chr1 (156015747-156015586) |
|
953-1245, gnl|Mm7|chr1 (156015466-156015744) |
|
953-1245, gnl|panTro1|chr1_random (34149375-34149580) |
|
953-1245, gnl|rheMac2|chr1 (190872028-190871823) |
|
953-1245, gnl|rn3|chr13 (71102980-71102850) |
|
cte (0.29274) |
|
cst (0.280073) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
eli (0.151814) |
|
ssp (0.13552) |
|
sug (0.127291) |
|
eru (0.120048) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
cte (0.29274) |
|
cst (0.280073) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
eli (0.151814) |
|
ssp (0.13552) |
|
sug (0.127291) |
|
eru (0.120048) |
|
spc (0.113366) |
|
ldo (0.0970026) |
