Non-Coding RNA Search

Ss1.1-rspc009_j8.5

Sequence:


               
               CTGATTCTATTGATTCACCTCCAGCAGAAAGAGAACCAGAAGTTGTGGACAACCTGGTAG
GCAAACAAGTGGAATATGCCAAAGAAGATGGCTCTAAAAGGACTGGCATGGTCATCCATC
AAGTAGAGGCCAAACCGTCTGTCTGTTTCATCAAGTTTGATGATGATTTCCATATTTATG
TCTACGATTTGGTGAAAACAACCTAGGTGTCATCACGAACTTTGCCAAATTTGTGGAACT
ATTAAATGTATAATTTGTAGATGTAAAGATTTGATTGCTTTCCATTTTAATGACAACTTA
AATGTCCCTGCGATCTCACAATCTGCCAGCAGAACTGGTTTTGTTCTGAATAGCATAGAT
TTCTGTGAATACAAAGTATATTGTGTAAGGAACTCCTTCCTCTTAAAAGAAGTCTGTCTG
TTTGGAGAGGAGGTACAGGCAATTTCAGTTTAAAAAAAAAGGTTGAGTTAGTATCATAGT
CATTTAAAACTGTAATAGACTTTATCAGTTTTCCCCTTCACTCTAACATTCTCTTAATCT
ACCACAATTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATTCTATTGATTCACCTCCAGCAGAAAGAGAACCAGAAGTTGTGGACAACCTGGTAG
GCAAACAAGTGGAATATGCCAAAGAAGATGGCTCTAAAAGGACTGGCATGGTCATCCATC
AAGTAGAGGCCAAACCGTCTGTCTGTTTCATCAAGTTTGATGATGATTTCCATATTTATG
TCTACGATTTGGTGAAAACAACCTAGGTGTCATCACGAACTTTGCCAAATTTGTGGAACT
ATTAAATGTATAATTTGTAGATGTAAAGATTTGATTGCTTTCCATTTTAATGACAACTTA
AATGTCCCTGCGATCTCACAATCTGCCAGCAGAACTGGTTTTGTTCTGAATAGCATAGAT
TTCTGTGAATACAAAGTATATTGTGTAAGGAACTCCTTCCTCTTAAAAGAAGTCTGTCTG
TTTGGAGAGGAGGTACAGGCAATTTCAGTTTAAAAAAAAAGGTTGAGTTAGTATCATAGT
CATTTAAAACTGTAATAGACTTTATCAGTTTTCCCCTTCACTCTAACATTCTCTTAATCT
ACCACAATTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47197632|emb|CAF87404.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47197632|emb|CAF87404.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-442, - strand, RNAz p=0.906028

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-442, - strand, RNAz p=0.906028

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-442, gnl|bosTau2|chr14 (46408106-46408545)
               

               
               1-442, gnl|Hg17|chr9 (88313066-88319986)
               

               
               1-442, gnl|Mm7|chr13 (50176134-50180988)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-442, gnl|bosTau2|chr14 (46408106-46408545)
               

               
               1-442, gnl|Hg17|chr9 (88313066-88319986)
               

               
               1-442, gnl|Mm7|chr13 (50176134-50180988)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spc (0.113366)

	1-442, gnl\|bosTau2\|chr14 (46408106-46408545)
	1-442, gnl\|Hg17\|chr9 (88313066-88319986)
	1-442, gnl\|Mm7\|chr13 (50176134-50180988)