Non-Coding RNA Search

Ss1.1-rspc009_l22.5

Sequence:


               
               GCCAAATATCATCTCTGAAGGAACATAGCATATATCCCACACCTCCCGGATTTACCTCGA
GCTTATTCACTTTAAGTGGGATACAGACAGTGGACACCATTAACTCTCTGAGTATGGTAA
CTCAATCCAAAGTGACCAAAATACCCAAACAATATCGAACAAAGGAAACGTTTGGTGCCA
CTCTAAGCAAAGACACCACCTTTACTAGCACTGACAAGGCTTTTGTGCCCTATCCAGAAG
ATACATCCACTGAAATGATCAATTCACATGAAGCAGCAGCTGCAACTCTAACTATTCACC
TCCAAGATGGAATGGTTACAAACACAAGCCTCACTAGCTCAACAAAATCATCCCCAACAC
CCATGACCCTAAGTATTACTAGTGGCATGCCAAATAATTTCTCTGAAATGCCTCAACAAA
GCACAACCCTTAACTTACGGAGGGAAGAGACAACCACAAATGTAAAGACTCGCTCACCTT
CTTCCGTGGCAAATGCTTGGAAAGTAAATGCTTTATTTCTCTTAATGCTCAATGCTGTGG
TCATGCTGGCTGTCTGAGGGTCTGCATTTTCCAAAATGAATGAAAGAACTCCTTCCTGAT
GTACAGTTGGGAAAACATGCCCAGTGACATAACCATAACCAGTGACTCAAGCTATATTAA
CTATTCAAGAAAGCCAGTCTTATATTTCTGACTCTGATGTAAATGAAGTATTTGTCTTAA
ATAAAAGTGCACAATGTCTCAGTACTTGCTGCTATTTTACTGTCTTAATGAAGTAAAACT
AATGAATTTCTTTTTTTTAAATAAAATGCTTTCTTTTTAAGGCTTCAATTTATTGCACAA
AATATAAAGCATCTAAACTTTAATATGTATTTTATGTATGTTTACACTGTCAAACAATTG
GGAAAAAAATAAAAGGTCTATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAATATCATCTCTGAAGGAACATAGCATATATCCCACACCTCCCGGATTTACCTCGA
GCTTATTCACTTTAAGTGGGATACAGACAGTGGACACCATTAACTCTCTGAGTATGGTAA
CTCAATCCAAAGTGACCAAAATACCCAAACAATATCGAACAAAGGAAACGTTTGGTGCCA
CTCTAAGCAAAGACACCACCTTTACTAGCACTGACAAGGCTTTTGTGCCCTATCCAGAAG
ATACATCCACTGAAATGATCAATTCACATGAAGCAGCAGCTGCAACTCTAACTATTCACC
TCCAAGATGGAATGGTTACAAACACAAGCCTCACTAGCTCAACAAAATCATCCCCAACAC
CCATGACCCTAAGTATTACTAGTGGCATGCCAAATAATTTCTCTGAAATGCCTCAACAAA
GCACAACCCTTAACTTACGGAGGGAAGAGACAACCACAAATGTAAAGACTCGCTCACCTT
CTTCCGTGGCAAATGCTTGGAAAGTAAATGCTTTATTTCTCTTAATGCTCAATGCTGTGG
TCATGCTGGCTGTCTGAGGGTCTGCATTTTCCAAAATGAATGAAAGAACTCCTTCCTGAT
GTACAGTTGGGAAAACATGCCCAGTGACATAACCATAACCAGTGACTCAAGCTATATTAA
CTATTCAAGAAAGCCAGTCTTATATTTCTGACTCTGATGTAAATGAAGTATTTGTCTTAA
ATAAAAGTGCACAATGTCTCAGTACTTGCTGCTATTTTACTGTCTTAATGAAGTAAAACT
AATGAATTTCTTTTTTTTAAATAAAATGCTTTCTTTTTAAGGCTTCAATTTATTGCACAA
AATATAAAGCATCTAAACTTTAATATGTATTTTATGTATGTTTACACTGTCAAACAATTG
GGAAAAAAATAAAAGGTCTATGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26333067|dbj|BAC30251.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26333067|dbj|BAC30251.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-237, - strand, RNAz p=0.963683

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-237, - strand, RNAz p=0.963683

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-924, gnl|bosTau2|chr19 (9785290-9784364)
               

               
               1-924, gnl|Hg17|chr17 (26646709-26645796)
               

               
               1-924, gnl|Mm7|chr11 (79583830-79582917)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr19 (9785290-9784364)
               

               
               1-924, gnl|Hg17|chr17 (26646709-26645796)
               

               
               1-924, gnl|Mm7|chr11 (79583830-79582917)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fco (1.41487)
               

               
               spc (0.906927)
               

               
               fbs (0.526039)
               

               
               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               fce (0.271592)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.41487)
               

               
               spc (0.906927)
               

               
               fbs (0.526039)
               

               
               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               fce (0.271592)
               

               
               ecc (0.115035)

	1-924, gnl\|bosTau2\|chr19 (9785290-9784364)
	1-924, gnl\|Hg17\|chr17 (26646709-26645796)
	1-924, gnl\|Mm7\|chr11 (79583830-79582917)

	fco (1.41487)
	spc (0.906927)
	fbs (0.526039)
	cbe (0.478469)
	hyp (0.42851)
	fce (0.271592)
	ecc (0.115035)