Non-Coding RNA Search

Ss1.1-rspc009_n22.5

Sequence:


               
               TTTAATCTTTCAACTGCTCTTTGAGGTGGACAACTGTCACTATATAATGGTGACAAGATC
AAGACTTAATGAAAATTTACTTTGCCTCAAGGTCCCAACCCTTAGATACAGTCTGTCCAA
CAAGGTGGGGAAAAGCCCCGCTGGTTGTCTTTGAAAGCAGCAGTCGCAGTGGAGGTGTTC
AGTGCCAAGTATTCCCAGAACAAGACACAGCAGCCACAGCTGAGCCAGCTCTTTTTTGCT
GGGTCATTCTTTCTGATGCTTCCTTATCAGTACCCTTGAAATGACCAAATCAGGTATAAA
CTACATTTAGGTTACATATTCTGTAGGTCCTCTCAATCCAAAACATCTTTCCTCTTCTGT
GGTACTAAAATTCTAAATGACCTGACAAGTTAAAAATAATATGCAAATGATTGGTTTTAA
GTTTAGTAGCGTAATGGCTAAGCTCAGAAACATATTTCCATTCCATTCACAACTCCAATG
TGTGAAGTAAGGAAAGGCTTTGGAGTAAAGAATACTGCCATAGAAAGCAGTGCCATCCAT
GGATTGAATTTAACACAGCTGACTCCCTAAAGGCGTGTCATCCCAAGGAGTGCGCAAAGT
TTTAACAATGACCTTTTAATGTATGTCGTTGAGTATGTTCTGCTTACCTCGTCATCCTGA
CCACTCTATGTCCTTTTTCAAAGTGTTCCTACACTTTGATTTGGAATGGCTCTAATGATT
CTTTGTACTTGAATGTGGTTGGTTAGGCCATGGATGAGTGCCTTGCACATAGTAGACATT
CAATAAATACTAAATGGCTGAAGGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAATCTTTCAACTGCTCTTTGAGGTGGACAACTGTCACTATATAATGGTGACAAGATC
AAGACTTAATGAAAATTTACTTTGCCTCAAGGTCCCAACCCTTAGATACAGTCTGTCCAA
CAAGGTGGGGAAAAGCCCCGCTGGTTGTCTTTGAAAGCAGCAGTCGCAGTGGAGGTGTTC
AGTGCCAAGTATTCCCAGAACAAGACACAGCAGCCACAGCTGAGCCAGCTCTTTTTTGCT
GGGTCATTCTTTCTGATGCTTCCTTATCAGTACCCTTGAAATGACCAAATCAGGTATAAA
CTACATTTAGGTTACATATTCTGTAGGTCCTCTCAATCCAAAACATCTTTCCTCTTCTGT
GGTACTAAAATTCTAAATGACCTGACAAGTTAAAAATAATATGCAAATGATTGGTTTTAA
GTTTAGTAGCGTAATGGCTAAGCTCAGAAACATATTTCCATTCCATTCACAACTCCAATG
TGTGAAGTAAGGAAAGGCTTTGGAGTAAAGAATACTGCCATAGAAAGCAGTGCCATCCAT
GGATTGAATTTAACACAGCTGACTCCCTAAAGGCGTGTCATCCCAAGGAGTGCGCAAAGT
TTTAACAATGACCTTTTAATGTATGTCGTTGAGTATGTTCTGCTTACCTCGTCATCCTGA
CCACTCTATGTCCTTTTTCAAAGTGTTCCTACACTTTGATTTGGAATGGCTCTAATGATT
CTTTGTACTTGAATGTGGTTGGTTAGGCCATGGATGAGTGCCTTGCACATAGTAGACATT
CAATAAATACTAAATGGCTGAAGGAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               617-772, + strand, RNAz p=0.942437

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               617-772, + strand, RNAz p=0.942437

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               17-806, gnl|bosTau2|chr1 (34668437-34669213)
               

               
               17-806, gnl|Hg17|chr3 (123624285-123623484)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-806, gnl|bosTau2|chr1 (34668437-34669213)
               

               
               17-806, gnl|Hg17|chr3 (123624285-123623484)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sme (0.305437)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	17-806, gnl\|bosTau2\|chr1 (34668437-34669213)
	17-806, gnl\|Hg17\|chr3 (123624285-123623484)

	sme (0.305437)
	mga (0.160205)
	csk (0.140746)
	ova (0.129132)
	sug (0.127291)
	spc (0.113366)