Non-Coding RNA Search

Ss1.1-rspc010_m18.5.5

Sequence:


               
               TCAGCAGGCTCTTCGTTGTGGCTGCCATGGGACAGCAACAGTATTCATTTGAGAATAGGG
GTGCCAGTCACAGGCATCATAAAATCAGGACCTCCCACCTGCACCATTCGCTCGTTGGCA
ACTCTTAGTTTATTCCATGTCATTCTGTTTACCGAGCATTTGCACTACACACATTGAGTG
TATGCTTTATTTATTCGTAGTTCGAAATCTTATGTCAGACAGCTGAGAGTAGAAAAATAC
AACATTTACCTAATGATACTCACTAATGTGGGAAGAGTTATGAAAATTCTGGAATGCTGT
AAATCCTGTCATACACTATGACATACAACTTCATCAAACTCCCACCAGGAGCCACTCTCC
TGTACTTAGAAATAACATCACAAGTAGTTTTCTAAGGTACAAGGCAGGCAAATATATTGC
TCTCTCAATACTTGAAGAAATGGTATTACACATATAAGCCTATTAGTTATACCTTTTCAC
AATCTTATAATATTGCCGTTAAAAGGGAAAAAAGAACAGGCAATGAATGGTGGGATGGTC
ATAGGACTTAGAGTGTATGAATGAGTCGATTCTGCTCTTTTGGAATTGGATGACGTTGAC
AGTAGGCGCTCACTGGATGATTACGCGTTGTTAATCTCCATTGTGATAAAATCTTAAACA
ATAAACATGATTTAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAATATTCAGATTTT
ATTTCACAATATTATGTATATCCATTCTAAACATGTTTCTGAGACAGGTCTCCCAAATTT
TATATGTGTATATGAGTGTGAAAATAGTGTGTGACATGTGAGAATTTTTTTTTATTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCAGGCTCTTCGTTGTGGCTGCCATGGGACAGCAACAGTATTCATTTGAGAATAGGG
GTGCCAGTCACAGGCATCATAAAATCAGGACCTCCCACCTGCACCATTCGCTCGTTGGCA
ACTCTTAGTTTATTCCATGTCATTCTGTTTACCGAGCATTTGCACTACACACATTGAGTG
TATGCTTTATTTATTCGTAGTTCGAAATCTTATGTCAGACAGCTGAGAGTAGAAAAATAC
AACATTTACCTAATGATACTCACTAATGTGGGAAGAGTTATGAAAATTCTGGAATGCTGT
AAATCCTGTCATACACTATGACATACAACTTCATCAAACTCCCACCAGGAGCCACTCTCC
TGTACTTAGAAATAACATCACAAGTAGTTTTCTAAGGTACAAGGCAGGCAAATATATTGC
TCTCTCAATACTTGAAGAAATGGTATTACACATATAAGCCTATTAGTTATACCTTTTCAC
AATCTTATAATATTGCCGTTAAAAGGGAAAAAAGAACAGGCAATGAATGGTGGGATGGTC
ATAGGACTTAGAGTGTATGAATGAGTCGATTCTGCTCTTTTGGAATTGGATGACGTTGAC
AGTAGGCGCTCACTGGATGATTACGCGTTGTTAATCTCCATTGTGATAAAATCTTAAACA
ATAAACATGATTTAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAATATTCAGATTTT
ATTTCACAATATTATGTATATCCATTCTAAACATGTTTCTGAGACAGGTCTCCCAAATTT
TATATGTGTATATGAGTGTGAAAATAGTGTGTGACATGTGAGAATTTTTTTTTATTATAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               247-364, - strand, RNAz p=0.692449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-364, - strand, RNAz p=0.692449

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               13-838, gnl|bosTau2|chr24 (20169993-20170821)
               

               
               13-838, gnl|canFam2|chr32 (37155923-37156689)
               

               
               13-838, gnl|echTel1|scaffold_61561 (1109-350)
               

               
               13-838, gnl|galGal2|chr4 (56775532-56774776)
               

               
               13-838, gnl|hg17|chr4 (115956219-115957000)
               

               
               13-838, gnl|Hg17|chr4 (115956304-115957136)
               

               
               13-838, gnl|loxAfr1|scaffold_4547 (49955-50725)
               

               
               13-838, gnl|mm7|chr3 (125704098-125703335)
               

               
               13-838, gnl|Mm7|chr3 (125704017-125703191)
               

               
               13-838, gnl|monDom2|scaffold_9 (78680807-78680010)
               

               
               13-838, gnl|oryCun1|scaffold_134396 (20497-19730)
               

               
               13-838, gnl|panTro1|chr3 (132635335-132636116)
               

               
               13-838, gnl|rheMac2|chr5 (107558492-107559273)
               

               
               13-838, gnl|rn3|chr2 (222965469-222964717)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-838, gnl|bosTau2|chr24 (20169993-20170821)
               

               
               13-838, gnl|canFam2|chr32 (37155923-37156689)
               

               
               13-838, gnl|echTel1|scaffold_61561 (1109-350)
               

               
               13-838, gnl|galGal2|chr4 (56775532-56774776)
               

               
               13-838, gnl|hg17|chr4 (115956219-115957000)
               

               
               13-838, gnl|Hg17|chr4 (115956304-115957136)
               

               
               13-838, gnl|loxAfr1|scaffold_4547 (49955-50725)
               

               
               13-838, gnl|mm7|chr3 (125704098-125703335)
               

               
               13-838, gnl|Mm7|chr3 (125704017-125703191)
               

               
               13-838, gnl|monDom2|scaffold_9 (78680807-78680010)
               

               
               13-838, gnl|oryCun1|scaffold_134396 (20497-19730)
               

               
               13-838, gnl|panTro1|chr3 (132635335-132636116)
               

               
               13-838, gnl|rheMac2|chr5 (107558492-107559273)
               

               
               13-838, gnl|rn3|chr2 (222965469-222964717)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               cbe (2.39234)
               

               
               spc (1.92722)
               

               
               fco (1.41487)
               

               
               rec (0.865351)
               

               
               fbs (0.701385)
               

               
               fhi (0.508733)
               

               
               sin (0.349895)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               fat (0.147427)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (2.39234)
               

               
               spc (1.92722)
               

               
               fco (1.41487)
               

               
               rec (0.865351)
               

               
               fbs (0.701385)
               

               
               fhi (0.508733)
               

               
               sin (0.349895)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               fat (0.147427)

	13-838, gnl\|bosTau2\|chr24 (20169993-20170821)
	13-838, gnl\|canFam2\|chr32 (37155923-37156689)
	13-838, gnl\|echTel1\|scaffold_61561 (1109-350)
	13-838, gnl\|galGal2\|chr4 (56775532-56774776)
	13-838, gnl\|hg17\|chr4 (115956219-115957000)
	13-838, gnl\|Hg17\|chr4 (115956304-115957136)
	13-838, gnl\|loxAfr1\|scaffold_4547 (49955-50725)
	13-838, gnl\|mm7\|chr3 (125704098-125703335)
	13-838, gnl\|Mm7\|chr3 (125704017-125703191)
	13-838, gnl\|monDom2\|scaffold_9 (78680807-78680010)
	13-838, gnl\|oryCun1\|scaffold_134396 (20497-19730)
	13-838, gnl\|panTro1\|chr3 (132635335-132636116)
	13-838, gnl\|rheMac2\|chr5 (107558492-107559273)
	13-838, gnl\|rn3\|chr2 (222965469-222964717)

	cbe (2.39234)
	spc (1.92722)
	fco (1.41487)
	rec (0.865351)
	fbs (0.701385)
	fhi (0.508733)
	sin (0.349895)
	hyp (0.285673)
	fce (0.271592)
	sag (0.182715)
	fat (0.147427)