Ss1.1-rspc011_a15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCACCTTGTTGGGGATACTTAAGGCTCCTCTCTGCAGAGCTTGCTGTCTTTGCTCATG TGCCCCCTCTCTCACCATCAAAGAGAAGCCTTCTGAAGACGGTCTGTTCTAGAAAACCCC TGCCGGCTGGTTCCTCCGCGGCCCGGAGCTGACAGTGAGACCTGGCCCTCCAGCTGGCTC TCTTCCTATGCCTGTCTGAGTGGCCTGCACTGACCAGGAGTGAACTCCTAGTTGATCCAA CATGAATTGGAAGGCTCTTGAACACATGCCCCTGCTCCTGTATATCCTGGCAGCGAAAAC ATTAATTCTCTGCCTGGCATTTGCCGGAGTCAAGATATACCAAAGGAAAAGATTGGAAGC AAAACAGCAAAAACTGGAAGCTGAAAGGAGGAAGCAGGCCGAGAAGAAGGATAACTAACG GGAGAGGAAAAGATTGTGTAATTTAAATGTCAGCTTGAGTGGACTCCAGCTGAGAAGAAA GCCTTAATTCCTGAATTATGTGTCAGAAGATGAACTCCCAACCTGTAGCCTAACTTAAAA TGATGGGAATTTTTATATGCTTTTAAAAGAACCGGTATTTTATTTACTTAAATAAAATGT CTTTGTAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCACCTTGTTGGGGATACTTAAGGCTCCTCTCTGCAGAGCTTGCTGTCTTTGCTCATG TGCCCCCTCTCTCACCATCAAAGAGAAGCCTTCTGAAGACGGTCTGTTCTAGAAAACCCC TGCCGGCTGGTTCCTCCGCGGCCCGGAGCTGACAGTGAGACCTGGCCCTCCAGCTGGCTC TCTTCCTATGCCTGTCTGAGTGGCCTGCACTGACCAGGAGTGAACTCCTAGTTGATCCAA CATGAATTGGAAGGCTCTTGAACACATGCCCCTGCTCCTGTATATCCTGGCAGCGAAAAC ATTAATTCTCTGCCTGGCATTTGCCGGAGTCAAGATATACCAAAGGAAAAGATTGGAAGC AAAACAGCAAAAACTGGAAGCTGAAAGGAGGAAGCAGGCCGAGAAGAAGGATAACTAACG GGAGAGGAAAAGATTGTGTAATTTAAATGTCAGCTTGAGTGGACTCCAGCTGAGAAGAAA GCCTTAATTCCTGAATTATGTGTCAGAAGATGAACTCCCAACCTGTAGCCTAACTTAAAA TGATGGGAATTTTTATATGCTTTTAAAAGAACCGGTATTTTATTTACTTAAATAAAATGT CTTTGTAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 251-432, gnl|bosTau2|chr14 (27537327-27537507) | |
| 251-432, gnl|canFam2|chr31 (31909922-31910104) | |
| 251-432, gnl|canFam2|chr31 (31910103-31909936) | |
| 251-432, gnl|dasNov1|scaffold_10222 (47318-47139) | |
| 251-432, gnl|dasNov1|scaffold_81907 (1987-2215) | |
| 251-432, gnl|echTel1|scaffold_120019 (561-717) | |
| 251-432, gnl|echTel1|scaffold_254916 (7726-7911) | |
| 251-432, gnl|galGal2|chr1 (99572433-99572618) | |
| 251-432, gnl|hg17|chr21 (34679631-34679813) | |
| 251-432, gnl|Hg17|chr21 (34679643-34679823) | |
| 251-432, gnl|hg17|chr6 (86502181-86502349) | |
| 251-432, gnl|loxAfr1|scaffold_74803 (3100-3283) | |
| 251-432, gnl|loxAfr1|scaffold_74803 (3280-3113) | |
| 251-432, gnl|mm7|chr16 (92361597-92361769) | |
| 251-432, gnl|mm7|chr16 (92361768-92361610) | |
| 251-432, gnl|Mm7|chr16 (92361608-92361779) | |
| 251-432, gnl|oryCun1|scaffold_210662 (8373-8191) | |
| 251-432, gnl|oryCun1|scaffold_210662 (8192-8360) | |
| 251-432, gnl|panTro1|chr22 (34671947-34672129) | |
| 251-432, gnl|panTro1|chr5 (88216307-88216475) | |
| 251-432, gnl|rheMac2|chr3 (12180146-12179964) | |
| 251-432, gnl|rheMac2|chr4 (81797720-81797888) | |
| 251-432, gnl|rn3|chr11 (32358465-32358638) | |
| 251-432, gnl|rn3|chr11 (32358637-32358479) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 251-432, gnl|bosTau2|chr14 (27537327-27537507) | |
| 251-432, gnl|canFam2|chr31 (31909922-31910104) | |
| 251-432, gnl|canFam2|chr31 (31910103-31909936) | |
| 251-432, gnl|dasNov1|scaffold_10222 (47318-47139) | |
| 251-432, gnl|dasNov1|scaffold_81907 (1987-2215) | |
| 251-432, gnl|echTel1|scaffold_120019 (561-717) | |
| 251-432, gnl|echTel1|scaffold_254916 (7726-7911) | |
| 251-432, gnl|galGal2|chr1 (99572433-99572618) | |
| 251-432, gnl|hg17|chr21 (34679631-34679813) | |
| 251-432, gnl|Hg17|chr21 (34679643-34679823) | |
| 251-432, gnl|hg17|chr6 (86502181-86502349) | |
| 251-432, gnl|loxAfr1|scaffold_74803 (3100-3283) | |
| 251-432, gnl|loxAfr1|scaffold_74803 (3280-3113) | |
| 251-432, gnl|mm7|chr16 (92361597-92361769) | |
| 251-432, gnl|mm7|chr16 (92361768-92361610) | |
| 251-432, gnl|Mm7|chr16 (92361608-92361779) | |
| 251-432, gnl|oryCun1|scaffold_210662 (8373-8191) | |
| 251-432, gnl|oryCun1|scaffold_210662 (8192-8360) | |
| 251-432, gnl|panTro1|chr22 (34671947-34672129) | |
| 251-432, gnl|panTro1|chr5 (88216307-88216475) | |
| 251-432, gnl|rheMac2|chr3 (12180146-12179964) | |
| 251-432, gnl|rheMac2|chr4 (81797720-81797888) | |
| 251-432, gnl|rn3|chr11 (32358465-32358638) | |
| 251-432, gnl|rn3|chr11 (32358637-32358479) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| cje (0.991408) | |
| che (0.68157) | |
| sto (0.539471) | |
| cut (0.509771) | |
| cki (0.495704) | |
| rec (0.346141) | |
| vin (0.332557) | |
| sme (0.305437) | |
| cte (0.29274) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ssp (0.271039) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| tes (0.207814) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.991408) | |
| che (0.68157) | |
| sto (0.539471) | |
| cut (0.509771) | |
| cki (0.495704) | |
| rec (0.346141) | |
| vin (0.332557) | |
| sme (0.305437) | |
| cte (0.29274) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ssp (0.271039) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| tes (0.207814) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| ldo (0.0970026) |