Non-Coding RNA Search

Ss1.1-rspc011_a4.5

Sequence:


               
               AGATGGCGGCTGTGGCTGTGCCGCTGCAGGGCTTGCGCCGCTTGTGTCGCGTGCTGCTGT
TCCTCTCGCAGTTCTACATCCTGTCGGGCGGCGGGTCCTTAAATGTAGAGCCTTCGCAGC
CGCTGGCTCAATCAGTCAAGGATCCGGGCCCGACACGTACTTTCACAGTAGTTCCCAGGG
CAGCAGAAAGTACCGATATCCCACCTTATGTGACGAAGTGTCCAAGCAATGGTTTGTGTA
GCAGACTTCCCGCAGACTGTATAGAGTGCAAGACCAATTTCTCCTGTGTCTATGGGAAGC
CTGTCACTTTTGACTGCACAGTCAAACCTTCTGTTACCTGTGTTGATCAAGACTTCAAAT
CCCAAAAGAACTTCATCATCAACATGACTTGCAGATTCTGCTGGCAGCTTCCGGAAACAG
ACTACGAGTGTTCCAATTCCACCAGCTGCATGACGGTGTCCTGCCCGAGGCAGCGCTACA
TTGCCAACTGCACTGTGCGGGACCACATCCACTGCTTGGGTAACCGTACTTTTCCGAAAA
TGCTTTACTGCAACTGGACTGGAGGTTATAAGTGGTCTACTGCTCTGGCTCTGAGCATCA
CCCTTGGTGGGTTTGGAGCAGACCGCTTTTACCTGGGTCAGTGGCGAGAAGGCCTTGGCA
AGCTCTTCAGCTTCGGGGGCCTGGGAATATGGACTCTGATCGATGTGCTGCTCATTGGGG
TTGGCTACGTGGGGCCTGCGGATGGCTCTTTGTACATTTAGCTGTGATTATGTGCTTCAG
AGAGGAGCAGTGCTTGGAAAACATCCTCTTACCTGTAGTAGTCAGTGTGCTGAGTGGTGT
ATTTTGTATGTTTTAATGTACAGCATCTGTACTTTGCCTGCCTTGATGAAGGTAAAATAA
AAAACACTGAACCATGTTTGTCTGGAATTTGTTTTTATTCTCCTGAAATATTTCTTTCCG
TGAAAAAATTTAAACAAACTTAAACTAGAAGAACAACCTGTACAGTGACTAAAAATCTTT
TCACTTCCTAGACTTGAGTTTTATATTGTTTATGTTACATTATGTCACTTGTAGTGTAAT
CTGCCCAGAAAAGCTTTTTAGTTATGATTGCAGAAAGTAGGAAGTATTTTTATTCTTTAA
CGAAATAGTTATCTACTGAAACTTCTGTCGTCTCTGAGTTTTACAGCACAATATCTATGT
AGTCTGATCTTTGTATATGACTGTTTGATGTAAGCTGCAGAACTTTTGTGTCTGGTTGCT
GTGATTTGAATTTTGTTAGTAATAGAAAAGATTGCAAGCGTACTGGAAAATTAATAAAGT
TACAAGTTACTTTAAAAATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGGCGGCTGTGGCTGTGCCGCTGCAGGGCTTGCGCCGCTTGTGTCGCGTGCTGCTGT
TCCTCTCGCAGTTCTACATCCTGTCGGGCGGCGGGTCCTTAAATGTAGAGCCTTCGCAGC
CGCTGGCTCAATCAGTCAAGGATCCGGGCCCGACACGTACTTTCACAGTAGTTCCCAGGG
CAGCAGAAAGTACCGATATCCCACCTTATGTGACGAAGTGTCCAAGCAATGGTTTGTGTA
GCAGACTTCCCGCAGACTGTATAGAGTGCAAGACCAATTTCTCCTGTGTCTATGGGAAGC
CTGTCACTTTTGACTGCACAGTCAAACCTTCTGTTACCTGTGTTGATCAAGACTTCAAAT
CCCAAAAGAACTTCATCATCAACATGACTTGCAGATTCTGCTGGCAGCTTCCGGAAACAG
ACTACGAGTGTTCCAATTCCACCAGCTGCATGACGGTGTCCTGCCCGAGGCAGCGCTACA
TTGCCAACTGCACTGTGCGGGACCACATCCACTGCTTGGGTAACCGTACTTTTCCGAAAA
TGCTTTACTGCAACTGGACTGGAGGTTATAAGTGGTCTACTGCTCTGGCTCTGAGCATCA
CCCTTGGTGGGTTTGGAGCAGACCGCTTTTACCTGGGTCAGTGGCGAGAAGGCCTTGGCA
AGCTCTTCAGCTTCGGGGGCCTGGGAATATGGACTCTGATCGATGTGCTGCTCATTGGGG
TTGGCTACGTGGGGCCTGCGGATGGCTCTTTGTACATTTAGCTGTGATTATGTGCTTCAG
AGAGGAGCAGTGCTTGGAAAACATCCTCTTACCTGTAGTAGTCAGTGTGCTGAGTGGTGT
ATTTTGTATGTTTTAATGTACAGCATCTGTACTTTGCCTGCCTTGATGAAGGTAAAATAA
AAAACACTGAACCATGTTTGTCTGGAATTTGTTTTTATTCTCCTGAAATATTTCTTTCCG
TGAAAAAATTTAAACAAACTTAAACTAGAAGAACAACCTGTACAGTGACTAAAAATCTTT
TCACTTCCTAGACTTGAGTTTTATATTGTTTATGTTACATTATGTCACTTGTAGTGTAAT
CTGCCCAGAAAAGCTTTTTAGTTATGATTGCAGAAAGTAGGAAGTATTTTTATTCTTTAA
CGAAATAGTTATCTACTGAAACTTCTGTCGTCTCTGAGTTTTACAGCACAATATCTATGT
AGTCTGATCTTTGTATATGACTGTTTGATGTAAGCTGCAGAACTTTTGTGTCTGGTTGCT
GTGATTTGAATTTTGTTAGTAATAGAAAAGATTGCAAGCGTACTGGAAAATTAATAAAGT
TACAAGTTACTTTAAAAATTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9H046_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H046_HUMAN

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               594-1340, gnl|bosTau2|chr21 (473110-472360)
               

               
               594-1340, gnl|Hg17|chr15 (100000372-99999572)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               594-1340, gnl|bosTau2|chr21 (473110-472360)
               

               
               594-1340, gnl|Hg17|chr15 (100000372-99999572)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               clu (0.478583)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	594-1340, gnl\|bosTau2\|chr21 (473110-472360)
	594-1340, gnl\|Hg17\|chr15 (100000372-99999572)

	clu (0.478583)
	vin (0.332557)
	cte (0.29274)
	cbe (0.239234)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	sto (0.179824)
	mcp (0.170648)
	cki (0.165235)
	tbr (0.154178)
	lin (0.145603)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	ova (0.129132)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)