Non-Coding RNA Search

Ss1.1-rspc011_d13.5

Sequence:


               
               AGCTTGCTTTCACAAGCAGTGCTTCCAGTCCTCCCAGTGCCCCCGCTGTGCGAGGATCAC
AGCCAGGAGGAGGCTTTTGGAGAGTCCGCCCTCTGCGGCCACATGATGCCCCTGACTATC
GCGAGAAGACTGTTCAACACAGCTAATTATCGCGTCCTTTGTGTCCTGACATTGTTTTAT
TATGGAGTATTGTCTATTAAGGAAAAAGATGGCCAATATTCTCTTTATTATATAAATATA
TATATTTAATATTTTAAAAGAATGAAGATTCTTTGTTATTAAGCCTAGGGTTGTTACCGG
TGATGTTGTTTACAAATCTTTAATGTTTTTGCTGCTACTGTTTTTTTTTTAAGAGTTTGT
GGGTTTTTTTTTTTGATACTTAAATTGCATTTGAGTAGTTGTACCTAGCCTGTTTTTTAT
GAATTGTAACTGACAAGATGAATTACTCAGTTCCCCTTCTTTGTAAAGCTTATTTTGTGA
AAGGGATTGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTGCTTTCACAAGCAGTGCTTCCAGTCCTCCCAGTGCCCCCGCTGTGCGAGGATCAC
AGCCAGGAGGAGGCTTTTGGAGAGTCCGCCCTCTGCGGCCACATGATGCCCCTGACTATC
GCGAGAAGACTGTTCAACACAGCTAATTATCGCGTCCTTTGTGTCCTGACATTGTTTTAT
TATGGAGTATTGTCTATTAAGGAAAAAGATGGCCAATATTCTCTTTATTATATAAATATA
TATATTTAATATTTTAAAAGAATGAAGATTCTTTGTTATTAAGCCTAGGGTTGTTACCGG
TGATGTTGTTTACAAATCTTTAATGTTTTTGCTGCTACTGTTTTTTTTTTAAGAGTTTGT
GGGTTTTTTTTTTTGATACTTAAATTGCATTTGAGTAGTTGTACCTAGCCTGTTTTTTAT
GAATTGTAACTGACAAGATGAATTACTCAGTTCCCCTTCTTTGTAAAGCTTATTTTGTGA
AAGGGATTGTTA

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-199, gnl|bosTau2|chr12 (6906517-6906317)
               

               
               1-199, gnl|Hg17|chr13 (45815626-45815438)
               

               
               1-199, gnl|Mm7|chr14 (69733680-69733853)
               


               
               292-492, gnl|bosTau2|chr12 (6904842-6904640)
               

               
               292-492, gnl|Hg17|chr13 (45815334-45815129)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr12 (6906517-6906317)
               

               
               1-199, gnl|Hg17|chr13 (45815626-45815438)
               

               
               1-199, gnl|Mm7|chr14 (69733680-69733853)
               


               
               292-492, gnl|bosTau2|chr12 (6904842-6904640)
               

               
               292-492, gnl|Hg17|chr13 (45815334-45815129)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spc (0.226732)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-199, gnl\|bosTau2\|chr12 (6906517-6906317)
	1-199, gnl\|Hg17\|chr13 (45815626-45815438)
	1-199, gnl\|Mm7\|chr14 (69733680-69733853)

	292-492, gnl\|bosTau2\|chr12 (6904842-6904640)
	292-492, gnl\|Hg17\|chr13 (45815334-45815129)