Non-Coding RNA Search

Ss1.1-rspc011_k17.5

Sequence:


               
               AAAAGACAAAAAAAAAAAAGACTATGGTACAATTCTCAGAAAAGGGCCACTTGGGAAGAA
GGATATGAGCAGCTGAAGGAGGTCAGCTCTGATGAATTAGTATCTTCTGTCAGTTATTGT
TCACATACACATTGTGATACTCACTGTTCAGTGTTTTTAATAGTTTGAGCATAACTTCTT
AATTCAGATTAGGGATAAGATCTTAAATGCTCATTTTTATTTAAAAATTTTTTTTCACTT
CACAAATCAATCTGTCTTTTGTTCACTTTCTGATCTGATAACTCTATTATTTAAGTTATT
CTTACTATACCTTTTTATTTCTCAAGGAGTTATTTTGGTTTTGAGGAATTATGTTGGGGC
CAGAACTGCAGCAGGACTGTGCTTTTGGAGTATATAGTAACATATATAATTTTGTGATGT
ATTGAGTCTCAGATTACGTTGGGAAGATCTATGTCATTAAACGTTAATAAAAATTCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGACAAAAAAAAAAAAGACTATGGTACAATTCTCAGAAAAGGGCCACTTGGGAAGAA
GGATATGAGCAGCTGAAGGAGGTCAGCTCTGATGAATTAGTATCTTCTGTCAGTTATTGT
TCACATACACATTGTGATACTCACTGTTCAGTGTTTTTAATAGTTTGAGCATAACTTCTT
AATTCAGATTAGGGATAAGATCTTAAATGCTCATTTTTATTTAAAAATTTTTTTTCACTT
CACAAATCAATCTGTCTTTTGTTCACTTTCTGATCTGATAACTCTATTATTTAAGTTATT
CTTACTATACCTTTTTATTTCTCAAGGAGTTATTTTGGTTTTGAGGAATTATGTTGGGGC
CAGAACTGCAGCAGGACTGTGCTTTTGGAGTATATAGTAACATATATAATTTTGTGATGT
ATTGAGTCTCAGATTACGTTGGGAAGATCTATGTCATTAAACGTTAATAAAAATTCAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               174-289, + strand, RNAz p=0.824195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-289, + strand, RNAz p=0.824195

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               18-474, gnl|bosTau2|chr8 (18678068-18678522)
               

               
               18-474, gnl|Hg17|chr9 (4588759-4588315)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-474, gnl|bosTau2|chr8 (18678068-18678522)
               

               
               18-474, gnl|Hg17|chr9 (4588759-4588315)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)

	18-474, gnl\|bosTau2\|chr8 (18678068-18678522)
	18-474, gnl\|Hg17\|chr9 (4588759-4588315)