Non-Coding RNA Search

Ss1.1-rspc011_k9.5

Sequence:


               
               GACCTCCTGACTGCTCAGCATGGGTTACCCAGACCGCGTCCCCACCCCTGGGCATAAACT
CTGAAGCCAGCATGAACAGAAAAAACAAACAATAACCAAATAGAGTTGAAGAATACAATA
CCTGAAATGGAAAATGTACTAAGAGGGATCAGAAGCAGAATAAATAAGTGAGCTGGAATA
CAGAGTGATGGAAATCACTGCCATGGAACAGAATTTTTAAAAAAATGAAATGATGAAAAC
AGTTTACTGGAGCTCTGGGATAATGTCAAAGGCACCAACATTCGTATTATAGGGGTCCAA
AAAGAGAAAGGATCTGAGAAAATGTTTGAAGAAATAATAGCTGAAACTTTCCCTAACATG
AGAAAGGAAGCACTCACCCAAGTCCAAGGATCACTTAGAGTTCCATACAGGATCAACCCA
AGGAGGAACACCCCAAGACAGAGTAGTCAAATTGACAAAAATTCGAGATAAAGATAAAAT
ATTAAAAGCAATGTGGGAAAAGCAATAAACAATATAGAAAGGAATCCCTGTAAAGTTATC
AGATGATTTTTCAAGAGAAATTCTACAGGCCAGAAGGGAGTGGCACAATATATTTGAAAT
GATAAAAGGGGAAAAACCTCAACCAAGAATACTCTACCCAGCAAGGCTCTTGTTCAGATT
CAACAGAGAAAAGAAAAGCTTTACAGAGAAGCAAAAGCTAAGAGAATTCAGCACAACCAA
ACCACCTTTACAGCAATTTTCTCTATGTGGAAAAACAAAAAGTCCCAACTGGAAACATGA
AAATTATGAAATGGAAAATCTCACCAGTAAAGGAATTTTATTGTTGGCCATTTGTCCCAG
AGAAATGAAACGTTCACATGAAAACTGTACATGGTTGTTCAGAGCAGCTTTATTTGTAAT
CATCAAAAATGGAAACAACCAGCAGTTCCCGTTGTGGCACAGTGGAAACGAATCCAACTA
GGAATGATGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTCCTGACTGCTCAGCATGGGTTACCCAGACCGCGTCCCCACCCCTGGGCATAAACT
CTGAAGCCAGCATGAACAGAAAAAACAAACAATAACCAAATAGAGTTGAAGAATACAATA
CCTGAAATGGAAAATGTACTAAGAGGGATCAGAAGCAGAATAAATAAGTGAGCTGGAATA
CAGAGTGATGGAAATCACTGCCATGGAACAGAATTTTTAAAAAAATGAAATGATGAAAAC
AGTTTACTGGAGCTCTGGGATAATGTCAAAGGCACCAACATTCGTATTATAGGGGTCCAA
AAAGAGAAAGGATCTGAGAAAATGTTTGAAGAAATAATAGCTGAAACTTTCCCTAACATG
AGAAAGGAAGCACTCACCCAAGTCCAAGGATCACTTAGAGTTCCATACAGGATCAACCCA
AGGAGGAACACCCCAAGACAGAGTAGTCAAATTGACAAAAATTCGAGATAAAGATAAAAT
ATTAAAAGCAATGTGGGAAAAGCAATAAACAATATAGAAAGGAATCCCTGTAAAGTTATC
AGATGATTTTTCAAGAGAAATTCTACAGGCCAGAAGGGAGTGGCACAATATATTTGAAAT
GATAAAAGGGGAAAAACCTCAACCAAGAATACTCTACCCAGCAAGGCTCTTGTTCAGATT
CAACAGAGAAAAGAAAAGCTTTACAGAGAAGCAAAAGCTAAGAGAATTCAGCACAACCAA
ACCACCTTTACAGCAATTTTCTCTATGTGGAAAAACAAAAAGTCCCAACTGGAAACATGA
AAATTATGAAATGGAAAATCTCACCAGTAAAGGAATTTTATTGTTGGCCATTTGTCCCAG
AGAAATGAAACGTTCACATGAAAACTGTACATGGTTGTTCAGAGCAGCTTTATTTGTAAT
CATCAAAAATGGAAACAACCAGCAGTTCCCGTTGTGGCACAGTGGAAACGAATCCAACTA
GGAATGATGAGC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               63-540, gnl|bosTau2|chr1 (40513899-40513418)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-540, gnl|bosTau2|chr1 (40513899-40513418)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)