Non-Coding RNA Search

Ss1.1-rspc011_m18.5

Sequence:


               
               TTATTTAGTTGTCCTGTTGCCATGGCTTTGAACATGTATCTCATTTTGGTGGGCACCTTG
GTTTAGATAGTTTGAAAAAACGAATAGTCCTTAGGAAACCTCAGGGTTTTTATTTTTCTG
TTTTAAAAGGTACACTAATAGTGTTATATTCAAACCTTAAAAGCCGATGCTGTAACAAAA
TGTATTTTGTGGAGGTGGGTGTGTCAGAAAGTCCCCTGAAGAACCAACCAGCTTCCCTAA
CTTTTTCCCCTTTTTTTTTTTTTTTTCTGTTTAACTAGTTTGATTAACTTGATTTTAAAA
CTTGGACTACAACTCCAGATTTTAAGCACACTGAAAGCTCTTATGTGTCAGCCCTTTTTA
AAGATATTATGCTGCTTTTAATATCCCAAATGAATGATTTTATCTCCTAAATTTTATATA
TCTGCTTCACTCTTGTAAAATCTTGGAAAGGAGGTGCTTAAAACTTTGGGAAGATTTAAC
TGTTAACACAATTCAGAAACAGTCTATTCTGTTTAAACACAACCTTAGCTTCAAGGGATT
ATTTCAAAGGGGAGGGGGCAGGGCGTGAAGTAATTCACTGCAAACCAGAACTATTGTAGT
TCAGGACTTAAAGCTACTGTATTTAGATGTGGGGTTTGAATATACGGATTTCTTTTCAAT
ACCTGTAAATATGGCTATATTCTTGTATTTGTACTGCAGTGTACAAAATGATACTAAAAA
GTAATAAATATGTTTTGACTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTAGTTGTCCTGTTGCCATGGCTTTGAACATGTATCTCATTTTGGTGGGCACCTTG
GTTTAGATAGTTTGAAAAAACGAATAGTCCTTAGGAAACCTCAGGGTTTTTATTTTTCTG
TTTTAAAAGGTACACTAATAGTGTTATATTCAAACCTTAAAAGCCGATGCTGTAACAAAA
TGTATTTTGTGGAGGTGGGTGTGTCAGAAAGTCCCCTGAAGAACCAACCAGCTTCCCTAA
CTTTTTCCCCTTTTTTTTTTTTTTTTCTGTTTAACTAGTTTGATTAACTTGATTTTAAAA
CTTGGACTACAACTCCAGATTTTAAGCACACTGAAAGCTCTTATGTGTCAGCCCTTTTTA
AAGATATTATGCTGCTTTTAATATCCCAAATGAATGATTTTATCTCCTAAATTTTATATA
TCTGCTTCACTCTTGTAAAATCTTGGAAAGGAGGTGCTTAAAACTTTGGGAAGATTTAAC
TGTTAACACAATTCAGAAACAGTCTATTCTGTTTAAACACAACCTTAGCTTCAAGGGATT
ATTTCAAAGGGGAGGGGGCAGGGCGTGAAGTAATTCACTGCAAACCAGAACTATTGTAGT
TCAGGACTTAAAGCTACTGTATTTAGATGTGGGGTTTGAATATACGGATTTCTTTTCAAT
ACCTGTAAATATGGCTATATTCTTGTATTTGTACTGCAGTGTACAAAATGATACTAAAAA
GTAATAAATATGTTTTGACTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               624-741, - strand, RNAz p=0.79473

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               624-741, - strand, RNAz p=0.79473

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-741, gnl|bosTau2|chr13 (16691041-16691751)
               

               
               4-741, gnl|Hg17|chr10 (28951254-28951946)
               

               
               4-741, gnl|Mm7|chr18 (8132138-8132780)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-741, gnl|bosTau2|chr13 (16691041-16691751)
               

               
               4-741, gnl|Hg17|chr10 (28951254-28951946)
               

               
               4-741, gnl|Mm7|chr18 (8132138-8132780)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	4-741, gnl\|bosTau2\|chr13 (16691041-16691751)
	4-741, gnl\|Hg17\|chr10 (28951254-28951946)
	4-741, gnl\|Mm7\|chr18 (8132138-8132780)