Non-Coding RNA Search

Ss1.1-rspc011_m21.5

Sequence:


               
               GTCTTCTTCCAATGATGCTTTTACTACAGAAGGCAAATCCAACACAATTAGAGAAGCCTT
TTCCATAAAGTGTAATTTTGATGGCTGCAGAACCAGCGACCCGTAACTGCCCTTTCAAAT
GGCATGACAAGGTTTGCAGTGGCCTCATCCAGCATGTGTGTGTCTCTATCTTGCATCTAC
CTGCTCCTCTTGGCCTAGTCAGATGGATGTAGATACAGATCCGCATGTGTCTGTATTCAC
ACAGCACCACTCACTTAGAGATGCTACTGTCAGCGTCCTCAGGGCTCTACCAAGGCGTCA
GGCACTGGGGTACCACACGGTCCATTTCATGTGATCTATTACTCTGACATAAGCCCATCT
GTAATATATTGCCAGTATATAAGCTATTTAGTTTGTTAATTGATTAAGCTGTATGTCTTA
TAAGAAATCATGTAAAGGGGGGATTACGGGGGGAGTGAGCTCTCTTGGACCCTTGAAGAT
GTAGCTTCCAAATTTGAACTGATTAAATGGCACCTGTATACCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTCTTCCAATGATGCTTTTACTACAGAAGGCAAATCCAACACAATTAGAGAAGCCTT
TTCCATAAAGTGTAATTTTGATGGCTGCAGAACCAGCGACCCGTAACTGCCCTTTCAAAT
GGCATGACAAGGTTTGCAGTGGCCTCATCCAGCATGTGTGTGTCTCTATCTTGCATCTAC
CTGCTCCTCTTGGCCTAGTCAGATGGATGTAGATACAGATCCGCATGTGTCTGTATTCAC
ACAGCACCACTCACTTAGAGATGCTACTGTCAGCGTCCTCAGGGCTCTACCAAGGCGTCA
GGCACTGGGGTACCACACGGTCCATTTCATGTGATCTATTACTCTGACATAAGCCCATCT
GTAATATATTGCCAGTATATAAGCTATTTAGTTTGTTAATTGATTAAGCTGTATGTCTTA
TAAGAAATCATGTAAAGGGGGGATTACGGGGGGAGTGAGCTCTCTTGGACCCTTGAAGAT
GTAGCTTCCAAATTTGAACTGATTAAATGGCACCTGTATACCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-358, - strand, RNAz p=0.784276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-358, - strand, RNAz p=0.784276

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               131-249, + strand, RNAmicro p=0.999788

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               131-249, + strand, RNAmicro p=0.999788

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-524, gnl|bosTau2|chr6 (56506989-56507514)
               

               
               1-524, gnl|Hg17|chr4 (87295330-87294810)
               

               
               1-524, gnl|Mm7|chr5 (102101235-102100730)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-524, gnl|bosTau2|chr6 (56506989-56507514)
               

               
               1-524, gnl|Hg17|chr4 (87295330-87294810)
               

               
               1-524, gnl|Mm7|chr5 (102101235-102100730)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	1-524, gnl\|bosTau2\|chr6 (56506989-56507514)
	1-524, gnl\|Hg17\|chr4 (87295330-87294810)
	1-524, gnl\|Mm7\|chr5 (102101235-102100730)

	cte (0.29274)
	cbe (0.239234)
	fcc (0.197785)
	fbs (0.175346)
	bla (0.124347)
	spc (0.113366)