Ss1.1-rspc012_m16.5
|
CAAAACTCAAGATCTTCCTCTGAGAAGCAGTCATCTGCATCTTTCTCTTATTCACGTGGC
CCCTAAATAATAGTGAAATAATTGAAAACGTGAAAGTTGAATTTTGAAGTTGCTAGTCTA
TTGTTTTTTGGTTTGGGGTTTATGTATTTGTTTTACGGCGGTACCCATGGCATATGGAGG
TTCCTGGGCCAGGGACTGAATCTGAGCCGCAGCTGCAAACTATGCCATAGCTGCAGCAAC
AACAGGTCCTTTAACCCACGGTGCTGGGCCAGGGATGGAACCCACAGCTCAGCAGAGACC
AGAGCCTCTGTGGCACAGCAGAAACTCCAAACTTTATTGTTTTTTGATGTGAAGCAAATC
CATAACTGCCCTTGGAACGCTTTAGTTTTTATCATTATTCAGTCACTGAAATATTAGAAA
TTAGTTTCCATGGCTACCAGCAGAAGGGAACTGGATTATTTTATACTGTTTTTAGTGGAC
AAAAGACACAAGTTATTTGAATCTCCATGCTGGGGAGCAGCAGCTTGCATTTGGCAGTGA
GATTTTAGTATCTGTGACTTTGTAACTCTTGTTAATATCAGTGCTATGGGTGCTCAGAAA
AAAAGGTAAACCCTGAAAGCAGAGAATTTAGAAGTCTAAAAGCCAAAACCACCTTAGGGT
TTAAAAAAAAAAAAAAAAGAGTGTGGTATGTGTTTGCTTGTATCTGAGTAAGTGCTCGTG
ACAGGTCAGTACAAAATATTTGATTCTCTGCAATCTCACTCTTTAATTTGATCTTCATAA
GGTTAGGGTGGCATTTTCCGTTTATCTCTGTTTACCTTTAATAAAAACGAAGGAATACAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAAAACTCAAGATCTTCCTCTGAGAAGCAGTCATCTGCATCTTTCTCTTATTCACGTGGC
CCCTAAATAATAGTGAAATAATTGAAAACGTGAAAGTTGAATTTTGAAGTTGCTAGTCTA
TTGTTTTTTGGTTTGGGGTTTATGTATTTGTTTTACGGCGGTACCCATGGCATATGGAGG
TTCCTGGGCCAGGGACTGAATCTGAGCCGCAGCTGCAAACTATGCCATAGCTGCAGCAAC
AACAGGTCCTTTAACCCACGGTGCTGGGCCAGGGATGGAACCCACAGCTCAGCAGAGACC
AGAGCCTCTGTGGCACAGCAGAAACTCCAAACTTTATTGTTTTTTGATGTGAAGCAAATC
CATAACTGCCCTTGGAACGCTTTAGTTTTTATCATTATTCAGTCACTGAAATATTAGAAA
TTAGTTTCCATGGCTACCAGCAGAAGGGAACTGGATTATTTTATACTGTTTTTAGTGGAC
AAAAGACACAAGTTATTTGAATCTCCATGCTGGGGAGCAGCAGCTTGCATTTGGCAGTGA
GATTTTAGTATCTGTGACTTTGTAACTCTTGTTAATATCAGTGCTATGGGTGCTCAGAAA
AAAAGGTAAACCCTGAAAGCAGAGAATTTAGAAGTCTAAAAGCCAAAACCACCTTAGGGT
TTAAAAAAAAAAAAAAAAGAGTGTGGTATGTGTTTGCTTGTATCTGAGTAAGTGCTCGTG
ACAGGTCAGTACAAAATATTTGATTCTCTGCAATCTCACTCTTTAATTTGATCTTCATAA
GGTTAGGGTGGCATTTTCCGTTTATCTCTGTTTACCTTTAATAAAAACGAAGGAATACAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
400-837, gnl|bosTau2|chr13 (33052440-33052010) |
|
400-837, gnl|canFam2|chr24 (18954126-18953862) |
|
400-837, gnl|dasNov1|scaffold_102568 (1246-1049) |
|
400-837, gnl|echTel1|scaffold_284768 (96842-96609) |
|
400-837, gnl|hg17|chr20 (5794014-5794275) |
|
400-837, gnl|Hg17|chr20 (5794013-5794438) |
|
400-837, gnl|loxAfr1|scaffold_28739 (11396-11653) |
|
400-837, gnl|mm7|chr2 (132493187-132493455) |
|
400-837, gnl|Mm7|chr2 (132493186-132493618) |
|
400-837, gnl|monDom2|scaffold_1 (36116453-36116734) |
|
400-837, gnl|oryCun1|scaffold_200763 (86879-86626) |
|
400-837, gnl|panTro1|chr21 (5773488-5773747) |
|
400-837, gnl|rheMac2|chr10 (39165181-39165441) |
|
400-837, gnl|rn3|chr3 (120443964-120444207) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
400-837, gnl|bosTau2|chr13 (33052440-33052010) |
|
400-837, gnl|canFam2|chr24 (18954126-18953862) |
|
400-837, gnl|dasNov1|scaffold_102568 (1246-1049) |
|
400-837, gnl|echTel1|scaffold_284768 (96842-96609) |
|
400-837, gnl|hg17|chr20 (5794014-5794275) |
|
400-837, gnl|Hg17|chr20 (5794013-5794438) |
|
400-837, gnl|loxAfr1|scaffold_28739 (11396-11653) |
|
400-837, gnl|mm7|chr2 (132493187-132493455) |
|
400-837, gnl|Mm7|chr2 (132493186-132493618) |
|
400-837, gnl|monDom2|scaffold_1 (36116453-36116734) |
|
400-837, gnl|oryCun1|scaffold_200763 (86879-86626) |
|
400-837, gnl|panTro1|chr21 (5773488-5773747) |
|
400-837, gnl|rheMac2|chr10 (39165181-39165441) |
|
400-837, gnl|rn3|chr3 (120443964-120444207) |
|
sag (0.182715) |
|
cst (0.140036) |
|
kid (0.129735) |
|
eep (0.122564) |
|
jca (0.11396) |
|
spc (0.113366) |
|
sag (0.182715) |
|
cst (0.140036) |
|
kid (0.129735) |
|
eep (0.122564) |
|
jca (0.11396) |
|
spc (0.113366) |
