Non-Coding RNA Search

Ss1.1-rspc013_b6.5

Sequence:


               
               GTCTGATGTCAAGGTTGCTACAGATCCCAAAGAAGTGTTGTTACTGATGTCAGCTTGCAA
ACAACCGTCCAACAAGTGCACAGCCGTCCACAGCCCTGTGATGTCCAGCCTGAACACTTC
CGTGGTCTTTGGATTCTTGAACTTTATCCTCTGGGCTGGAAACATCTGGTTTGTTTTCAA
GGAGACCGGCTGGCATTCCTCGGGACAGAGATATCTTTCAGACCCAATGGAAAAGCACTC
CAGTAGCTTCAACCAAGGTGGATACAACCAAGACAGCTATGGCTCGAGCAGTGGGTACAG
CCAGCAGGCGAGTTTGGGGCCATCCTCAGATGAGTTTGGCCAACAGCCCAGTGGCCCTGC
CTCTTTTACCAACCAGATTTAACAGGGTGATGTTGGAAATCTTTGGAAGATAGTCTTACC
ACTTTCCATGTCAGTGGCAGAAGAATTTTTTAAGAGTTTCAATTATTAATGCAGAGAGTG
TTGAATGTAAATCAGAGATCTGTAGTCCTCATTAAGGCAGAAAGGCCTGAGTTGTGATAA
ATGGTACTGAGAGATAAGATGACATGAGGAGATAGATTATTCATTATGGATGGCTAATTG
GAGAGTACCTTGTTATATACACAGGTACTTTTATGGTCGTTTTGTATGCGTGTCGAGATA
GAAGCATTTTGTAGCTTGAAGTCTCTAGTATGTAATATGCAAAAAGCCAATTAAATAGCA
TTGAGTTTTCTTATGCATTTCGATGCGAAAGACGTTTTAACGATTTCTCGAAGATGATTT
GGTGCATCACAACGTGCATGTATTATTATTTTTAGTTGCAGGCCCTGTAGGATTGTGAAT
CTCTTAAGTATTGGTTTTAGACAATTACTCTGTATTTTTTTTATTTGTGAATCAATGCTC
ATATGATTTAGTGCATGAATAAGCATTTCCTCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGATGTCAAGGTTGCTACAGATCCCAAAGAAGTGTTGTTACTGATGTCAGCTTGCAA
ACAACCGTCCAACAAGTGCACAGCCGTCCACAGCCCTGTGATGTCCAGCCTGAACACTTC
CGTGGTCTTTGGATTCTTGAACTTTATCCTCTGGGCTGGAAACATCTGGTTTGTTTTCAA
GGAGACCGGCTGGCATTCCTCGGGACAGAGATATCTTTCAGACCCAATGGAAAAGCACTC
CAGTAGCTTCAACCAAGGTGGATACAACCAAGACAGCTATGGCTCGAGCAGTGGGTACAG
CCAGCAGGCGAGTTTGGGGCCATCCTCAGATGAGTTTGGCCAACAGCCCAGTGGCCCTGC
CTCTTTTACCAACCAGATTTAACAGGGTGATGTTGGAAATCTTTGGAAGATAGTCTTACC
ACTTTCCATGTCAGTGGCAGAAGAATTTTTTAAGAGTTTCAATTATTAATGCAGAGAGTG
TTGAATGTAAATCAGAGATCTGTAGTCCTCATTAAGGCAGAAAGGCCTGAGTTGTGATAA
ATGGTACTGAGAGATAAGATGACATGAGGAGATAGATTATTCATTATGGATGGCTAATTG
GAGAGTACCTTGTTATATACACAGGTACTTTTATGGTCGTTTTGTATGCGTGTCGAGATA
GAAGCATTTTGTAGCTTGAAGTCTCTAGTATGTAATATGCAAAAAGCCAATTAAATAGCA
TTGAGTTTTCTTATGCATTTCGATGCGAAAGACGTTTTAACGATTTCTCGAAGATGATTT
GGTGCATCACAACGTGCATGTATTATTATTTTTAGTTGCAGGCCCTGTAGGATTGTGAAT
CTCTTAAGTATTGGTTTTAGACAATTACTCTGTATTTTTTTTATTTGTGAATCAATGCTC
ATATGATTTAGTGCATGAATAAGCATTTCCTCACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61875088|ref|XP_581098.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875088|ref|XP_581098.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               599-715, + strand, RNAz p=0.628015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               599-715, + strand, RNAz p=0.628015

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144642, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144642, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-935, gnl|bosTau2|chr22 (28501084-28500272)
               

               
               124-935, gnl|Hg17|chr3 (63575939-63576747)
               

               
               124-935, gnl|Mm7|chr14 (11430277-11431082)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-935, gnl|bosTau2|chr22 (28501084-28500272)
               

               
               124-935, gnl|Hg17|chr3 (63575939-63576747)
               

               
               124-935, gnl|Mm7|chr14 (11430277-11431082)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               spc (0.113366)

	124-935, gnl\|bosTau2\|chr22 (28501084-28500272)
	124-935, gnl\|Hg17\|chr3 (63575939-63576747)
	124-935, gnl\|Mm7\|chr14 (11430277-11431082)