Non-Coding RNA Search

Ss1.1-rspc013_f16.5

Sequence:


               
               TGACCTAGCTACAGTACATTACAAAACTCAAAATATTGCTTTGAAGATGGCACTCTGGGA
ATAAGCATGGGGCTCCATGAGTCCCCTTCTGTCCCTGCCAAACCCTCTTCCATCCAGTGA
CAAGCCATGGGCGTGCCCTGGGCATGCATGCAATACAGCAAGACCAACACAAGAGCAATA
TTCAATTGTTCGTTAGATCTAAAATTATATATATAATATATATATAATTCTTTCTGCATT
TTTGAAGTGTAAAGGAGTACATTGTACATATCTGTAAGCTAGTATCTTTGTTTCACTGTT
TGTAATATTTAAGAGATGCTTGTTCTTTATAGAACAAAAGTATTAAATATCAAAAAACAC
TCTGTGATATTTAATTTCTTTTTCAAAATTTGTAAAATGTTGCTCCTCCCTAAGCTCTCT
GGAAATATTCATAACTTATGGGACACATGTAAACCCTCGAAGATCCTTCCTGGAATTTAG
CGCCGCACAAAGGCGGTGTGTGGACAGAGCACTTACAGAGCATGACTTTTCTGTGTGTGG
GATGGCCATGTGTCTGTTTACCTTTAAGGTGTATTTACTGTTACAATTCCATGACCTAGT
TTATTGACAGTTAGAACAATCCCTCTTGCACACAAGTTTCTAGTCGTCATCAATGTTCTG
AAAATAATAAGCATATTCAAATAAAGCTTTGGTTCTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCTAGCTACAGTACATTACAAAACTCAAAATATTGCTTTGAAGATGGCACTCTGGGA
ATAAGCATGGGGCTCCATGAGTCCCCTTCTGTCCCTGCCAAACCCTCTTCCATCCAGTGA
CAAGCCATGGGCGTGCCCTGGGCATGCATGCAATACAGCAAGACCAACACAAGAGCAATA
TTCAATTGTTCGTTAGATCTAAAATTATATATATAATATATATATAATTCTTTCTGCATT
TTTGAAGTGTAAAGGAGTACATTGTACATATCTGTAAGCTAGTATCTTTGTTTCACTGTT
TGTAATATTTAAGAGATGCTTGTTCTTTATAGAACAAAAGTATTAAATATCAAAAAACAC
TCTGTGATATTTAATTTCTTTTTCAAAATTTGTAAAATGTTGCTCCTCCCTAAGCTCTCT
GGAAATATTCATAACTTATGGGACACATGTAAACCCTCGAAGATCCTTCCTGGAATTTAG
CGCCGCACAAAGGCGGTGTGTGGACAGAGCACTTACAGAGCATGACTTTTCTGTGTGTGG
GATGGCCATGTGTCTGTTTACCTTTAAGGTGTATTTACTGTTACAATTCCATGACCTAGT
TTATTGACAGTTAGAACAATCCCTCTTGCACACAAGTTTCTAGTCGTCATCAATGTTCTG
AAAATAATAAGCATATTCAAATAAAGCTTTGGTTCTGAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-229, + strand, RNAz p=0.976196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-229, + strand, RNAz p=0.976196

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               118-205, BovGen_05472 normal cattle brain Bos taurus cDNA clone 
(gb|CO877147.1|), blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1254426 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN516008.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1255194 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN516682.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1476089 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT893558.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1479449 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT900346.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, LB01831.CR_O16 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE225605.1|), 
blast E-value=3e-29, identity=94.32%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               118-205, BovGen_05472 normal cattle brain Bos taurus cDNA clone 
(gb|CO877147.1|), blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1254426 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN516008.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1255194 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN516682.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1476089 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT893558.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, 1479449 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT900346.1|), 
blast E-value=3e-29, identity=94.32% 
               

               
               118-205, LB01831.CR_O16 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE225605.1|), 
blast E-value=3e-29, identity=94.32%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017594, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017594, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-698, gnl|bosTau2|chr8 (47830631-47831335)
               

               
               1-698, gnl|Hg17|chr9 (90452380-90451675)
               

               
               1-698, gnl|Mm7|chr13 (51543440-51542753)
               


               
               184-515, gnl|bosTau2|chr18 (50064371-50064711)
               

               
               184-515, gnl|Hg17|chr9 (90452207-90451862)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-698, gnl|bosTau2|chr8 (47830631-47831335)
               

               
               1-698, gnl|Hg17|chr9 (90452380-90451675)
               

               
               1-698, gnl|Mm7|chr13 (51543440-51542753)
               


               
               184-515, gnl|bosTau2|chr18 (50064371-50064711)
               

               
               184-515, gnl|Hg17|chr9 (90452207-90451862)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.717703)
               

               
               fco (0.628832)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               fco (0.628832)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	118-205, BovGen_05472 normal cattle brain Bos taurus cDNA clone (gb\|CO877147.1\|), blast E-value=3e-29, identity=94.32%
	118-205, 1254426 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN516008.1\|), blast E-value=3e-29, identity=94.32%
	118-205, 1255194 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN516682.1\|), blast E-value=3e-29, identity=94.32%
	118-205, 1476089 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT893558.1\|), blast E-value=3e-29, identity=94.32%
	118-205, 1479449 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT900346.1\|), blast E-value=3e-29, identity=94.32%
	118-205, LB01831.CR_O16 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|EE225605.1\|), blast E-value=3e-29, identity=94.32%

	1-698, gnl\|bosTau2\|chr8 (47830631-47831335)
	1-698, gnl\|Hg17\|chr9 (90452380-90451675)
	1-698, gnl\|Mm7\|chr13 (51543440-51542753)

	184-515, gnl\|bosTau2\|chr18 (50064371-50064711)
	184-515, gnl\|Hg17\|chr9 (90452207-90451862)

	cbe (0.717703)
	fco (0.628832)
	fhi (0.169578)
	ret (0.128733)
	cbr (0.127975)
	bla (0.124347)
	spc (0.113366)