Ss1.1-rspc013_h16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGATCGAGCTCGTCCTGGGCGGTCCCCTCTGCCCGCTGCTAGGGTCCGGAGCCACGAC CTTTTTGCGACTCCTCCGAGCGCTTCGAGTCCGAGGCGGAGGCCGCCATGGCGCTGCGAG CAGCGGTGTTCGACCTGGACGGGGTCCTGGCACTGCCATCGATCACCACCTCCTGGGCCC GCGCCGAGGAGAAGCTGGCGCTGCCCAGAGGTTTTCTGAATGAAGCTTTCAAGAAAGGAG GCCAGGATGGCTCCGTTGCTCGCGTGATGACGGGAGAGATCACGTTTTCGCAGTGGGTGC CCTTCATGGAAGAAGACTGCAGGAAGTGTGCTGAGGACTCGGGAATACGCCTGCCTGAGA ATTTCTCCGTAAAGCACATCTTTGACAAGGCGCTTTCAGAGAAAAAGATCAACTACCCCA TGCTGCAGGCCGCTCTCACTCTCAAAAAGAAGGGATTTTCAACCTGCATCCTCACCAACA ACTGGCTGGATGACAGCGCCCAGAGAGGCAGCCGGGCCCAGTTGATGTGTGAGCTCAGAC CACACTTCGACTTCCTGATTGAGTCATGCAGGGTCGGAATGGCCAAGCCTGACCCTCAGA TCTACAAGCTCATGCTGGACACCTTGAAGGCCGAACCCAACGAGGTTGTTTTCCTGGATG ATGTCGGGACTCATCTGAAGCCAGTCCGTGACCTGGGCATGGCCACCATTCTCGTCCGCG ACACTGACACGGCCCTGAGGGAGCTGGAGAAAGTGACTGGAGTGCAGCTTCTCCAAACTC CAGCCCTTCCTCCCACCTCCTGCGATCCGAGCGCCCTGAGCCACGGGTACGTGCTCATCA AGCCTGGGGTACGTCTGCATTTTGTGGAGATGGGCTCCGGCCCTGCTGTGTGCCTCTGCC ATGGATTTCCTGAGAGCTGGTTCTCTTGGAGGTACCAGATCCCTGCCCTGGCCCAGGCGG GCTTCCGGGTGCTGGCTGTGGACATGAAAGGCTATGGAGAGTCGTCTGCTCCTCCCGAAA TAGAAGAATATTCCTTGGAAGTGTTATGCAAGGACATGGTGACCTTCCTGAATAAGTTGG GCCTCTCTCAAGCCGTGTTCATTGGCCACGACTGGGGAGGCGTGCTGGTGTGGAACATGG CTCTCTTCTACCCTGAGAGAGTGAGGGCGGTGGCCAGTCTGAATACTCCCTTCATGCCAT CAAATCCCAATGTGTCCCCAATGGAGATCATCAAAGCCAATCCTGTCTTTGATTACCAGC TCTACTTCCAAGAGCCGGGAGTGGCGGAGGCTGAACTGGAACAGAACCTGGATCGGACTT TCAAAAACTTCTTCAGAGCACATGATGAGACTTTTCTCACCACGAACAGAGTCCGTGAAT TGGGAGGACTTTTTGTGGGGACCCCAGAGGAGCCCAGCCTCAGCAGGCTAGTCACCGAGG AGGACATCCAGTTCTATGTGCAGCAGTTCAAGAAGTCTGGGTTCAGGGGGCCTCTAAACT GGTACCGGAACATGGAAAGGAACTGGCAGTGGGGCTGCAAAGGCTCAGGAAGGAAGATCC TGATTCCAGCCCTGATGGTCACTGCTGAGAATGACCTGGTGCTTCATCCCAAGATGTCCA AGCATATGGAGAATTGGATCCCCAACCTGAAAAGGGGACACATTAAGGATTGCGGACACT GGACACAAATAGACAAGCCCGCTGAGCTGAATCGGATCCTCATTGAGTGGCTGGAGACTG ATGCCAGGAACCCACTGGTGGATTCAAAGCTTTAGGGTGTGACTTGGGTCTGTCGCCAGC AGGCGCTCCAACCTCTTCATCTCCTGGGGCACTGCTGTGGTACCCACATGTAGCCTTACC TGTCCCAGAACCAGCAGCACTGCTCTGAAGCGGTCTGCAGCAAAGAATGATTTTCCTTAA ATGAAATGAGTCAGATTTGACAGAATTTGAGATACAGCAACAATCACGTGTGATTAATTC TCTGGGTATAAACGCATCACTTTATCTCTAAGGATGGTTAATGTTCTGTGGGGGATGGAA CGGGGGTGGCCAAGGGTGAGTTCTCTTTGACTAATCAATTCATTGTTTTGATGAGGCAAA AGCAGCAGTTTAGAATCATTTCAGCAGATCTGGGAAGTCTTTTATTCAATAAAGCAAAGA CAACTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGATCGAGCTCGTCCTGGGCGGTCCCCTCTGCCCGCTGCTAGGGTCCGGAGCCACGAC CTTTTTGCGACTCCTCCGAGCGCTTCGAGTCCGAGGCGGAGGCCGCCATGGCGCTGCGAG CAGCGGTGTTCGACCTGGACGGGGTCCTGGCACTGCCATCGATCACCACCTCCTGGGCCC GCGCCGAGGAGAAGCTGGCGCTGCCCAGAGGTTTTCTGAATGAAGCTTTCAAGAAAGGAG GCCAGGATGGCTCCGTTGCTCGCGTGATGACGGGAGAGATCACGTTTTCGCAGTGGGTGC CCTTCATGGAAGAAGACTGCAGGAAGTGTGCTGAGGACTCGGGAATACGCCTGCCTGAGA ATTTCTCCGTAAAGCACATCTTTGACAAGGCGCTTTCAGAGAAAAAGATCAACTACCCCA TGCTGCAGGCCGCTCTCACTCTCAAAAAGAAGGGATTTTCAACCTGCATCCTCACCAACA ACTGGCTGGATGACAGCGCCCAGAGAGGCAGCCGGGCCCAGTTGATGTGTGAGCTCAGAC CACACTTCGACTTCCTGATTGAGTCATGCAGGGTCGGAATGGCCAAGCCTGACCCTCAGA TCTACAAGCTCATGCTGGACACCTTGAAGGCCGAACCCAACGAGGTTGTTTTCCTGGATG ATGTCGGGACTCATCTGAAGCCAGTCCGTGACCTGGGCATGGCCACCATTCTCGTCCGCG ACACTGACACGGCCCTGAGGGAGCTGGAGAAAGTGACTGGAGTGCAGCTTCTCCAAACTC CAGCCCTTCCTCCCACCTCCTGCGATCCGAGCGCCCTGAGCCACGGGTACGTGCTCATCA AGCCTGGGGTACGTCTGCATTTTGTGGAGATGGGCTCCGGCCCTGCTGTGTGCCTCTGCC ATGGATTTCCTGAGAGCTGGTTCTCTTGGAGGTACCAGATCCCTGCCCTGGCCCAGGCGG GCTTCCGGGTGCTGGCTGTGGACATGAAAGGCTATGGAGAGTCGTCTGCTCCTCCCGAAA TAGAAGAATATTCCTTGGAAGTGTTATGCAAGGACATGGTGACCTTCCTGAATAAGTTGG GCCTCTCTCAAGCCGTGTTCATTGGCCACGACTGGGGAGGCGTGCTGGTGTGGAACATGG CTCTCTTCTACCCTGAGAGAGTGAGGGCGGTGGCCAGTCTGAATACTCCCTTCATGCCAT CAAATCCCAATGTGTCCCCAATGGAGATCATCAAAGCCAATCCTGTCTTTGATTACCAGC TCTACTTCCAAGAGCCGGGAGTGGCGGAGGCTGAACTGGAACAGAACCTGGATCGGACTT TCAAAAACTTCTTCAGAGCACATGATGAGACTTTTCTCACCACGAACAGAGTCCGTGAAT TGGGAGGACTTTTTGTGGGGACCCCAGAGGAGCCCAGCCTCAGCAGGCTAGTCACCGAGG AGGACATCCAGTTCTATGTGCAGCAGTTCAAGAAGTCTGGGTTCAGGGGGCCTCTAAACT GGTACCGGAACATGGAAAGGAACTGGCAGTGGGGCTGCAAAGGCTCAGGAAGGAAGATCC TGATTCCAGCCCTGATGGTCACTGCTGAGAATGACCTGGTGCTTCATCCCAAGATGTCCA AGCATATGGAGAATTGGATCCCCAACCTGAAAAGGGGACACATTAAGGATTGCGGACACT GGACACAAATAGACAAGCCCGCTGAGCTGAATCGGATCCTCATTGAGTGGCTGGAGACTG ATGCCAGGAACCCACTGGTGGATTCAAAGCTTTAGGGTGTGACTTGGGTCTGTCGCCAGC AGGCGCTCCAACCTCTTCATCTCCTGGGGCACTGCTGTGGTACCCACATGTAGCCTTACC TGTCCCAGAACCAGCAGCACTGCTCTGAAGCGGTCTGCAGCAAAGAATGATTTTCCTTAA ATGAAATGAGTCAGATTTGACAGAATTTGAGATACAGCAACAATCACGTGTGATTAATTC TCTGGGTATAAACGCATCACTTTATCTCTAAGGATGGTTAATGTTCTGTGGGGGATGGAA CGGGGGTGGCCAAGGGTGAGTTCTCTTTGACTAATCAATTCATTGTTTTGATGAGGCAAA AGCAGCAGTTTAGAATCATTTCAGCAGATCTGGGAAGTCTTTTATTCAATAAAGCAAAGA CAACTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 104-206, gnl|bosTau2|chr5 (33972116-33972014) | |
| 104-206, gnl|canFam2|chr25 (33095728-33095509) | |
| 104-206, gnl|echTel1|scaffold_297505 (73949-74229) | |
| 104-206, gnl|hg17|chr8 (27404508-27404768) | |
| 104-206, gnl|Hg17|chr8 (27404639-27404741) | |
| 104-206, gnl|mm7|chr14 (60985050-60984788) | |
| 104-206, gnl|Mm7|chr14 (60984903-60984801) | |
| 104-206, gnl|panTro1|chr7 (28376573-28376833) | |
| 104-206, gnl|rheMac2|chr8 (27641625-27641873) | |
| 104-206, gnl|rn3|chr15 (45571982-45571729) | |
| 453-646, gnl|bosTau2|chr5 (33959332-33959139) | |
| 453-646, gnl|canFam2|chr25 (33081912-33081621) | |
| 453-646, gnl|echTel1|scaffold_297505 (92039-92319) | |
| 453-646, gnl|hg17|chr8 (27418381-27418673) | |
| 453-646, gnl|Hg17|chr8 (27418389-27418582) | |
| 453-646, gnl|loxAfr1|scaffold_5362 (57286-57573) | |
| 453-646, gnl|mm7|chr14 (60968642-60968360) | |
| 453-646, gnl|Mm7|chr14 (60968632-60968439) | |
| 453-646, gnl|monDom2|scaffold_1 (153228838-153229113) | |
| 453-646, gnl|oryCun1|scaffold_176524 (36331-36615) | |
| 453-646, gnl|panTro1|chr7 (28390416-28390708) | |
| 453-646, gnl|rheMac2|chr8 (27659058-27659350) | |
| 453-646, gnl|rn3|chr15 (45558594-45558304) | |
| 1164-1276, gnl|bosTau2|chr5 (33918232-33918120) | |
| 1164-1276, gnl|canFam2|chr25 (33057887-33057712) | |
| 1164-1276, gnl|dasNov1|scaffold_163460 (4030-4193) | |
| 1164-1276, gnl|echTel1|scaffold_297505 (110072-110248) | |
| 1164-1276, gnl|hg17|chr8 (27438688-27438870) | |
| 1164-1276, gnl|Hg17|chr8 (27438794-27438906) | |
| 1164-1276, gnl|loxAfr1|scaffold_49794 (4080-4278) | |
| 1164-1276, gnl|mm7|chr14 (60953477-60953302) | |
| 1164-1276, gnl|Mm7|chr14 (60953376-60953264) | |
| 1164-1276, gnl|oryCun1|scaffold_159888 (754-911) | |
| 1164-1276, gnl|panTro1|chr7 (28410830-28411012) | |
| 1164-1276, gnl|rheMac2|chr8 (27679108-27679290) | |
| 1383-1487, gnl|bosTau2|chr5 (33906131-33906027) | |
| 1383-1487, gnl|canFam2|chr25 (33040851-33040587) | |
| 1383-1487, gnl|dasNov1|scaffold_23909 (12180-11927) | |
| 1383-1487, gnl|echTel1|scaffold_304884 (746-1017) | |
| 1383-1487, gnl|hg17|chr8 (27453970-27454247) | |
| 1383-1487, gnl|Hg17|chr8 (27453987-27454091) | |
| 1383-1487, gnl|loxAfr1|scaffold_72813 (8975-8705) | |
| 1383-1487, gnl|mm7|chr14 (60947542-60947297) | |
| 1383-1487, gnl|Mm7|chr14 (60947532-60947428) | |
| 1383-1487, gnl|oryCun1|scaffold_159888 (9293-9568) | |
| 1383-1487, gnl|panTro1|chr7 (28426178-28426455) | |
| 1383-1487, gnl|rheMac2|chr8 (27694815-27695092) | |
| 1383-1487, gnl|rn3|chr15 (45515553-45515299) | |
| 1694-2163, gnl|bosTau2|chr5 (33899103-33898632) | |
| 1694-2163, gnl|Hg17|chr8 (27457875-27458348) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-206, gnl|bosTau2|chr5 (33972116-33972014) | |
| 104-206, gnl|canFam2|chr25 (33095728-33095509) | |
| 104-206, gnl|echTel1|scaffold_297505 (73949-74229) | |
| 104-206, gnl|hg17|chr8 (27404508-27404768) | |
| 104-206, gnl|Hg17|chr8 (27404639-27404741) | |
| 104-206, gnl|mm7|chr14 (60985050-60984788) | |
| 104-206, gnl|Mm7|chr14 (60984903-60984801) | |
| 104-206, gnl|panTro1|chr7 (28376573-28376833) | |
| 104-206, gnl|rheMac2|chr8 (27641625-27641873) | |
| 104-206, gnl|rn3|chr15 (45571982-45571729) | |
| 453-646, gnl|bosTau2|chr5 (33959332-33959139) | |
| 453-646, gnl|canFam2|chr25 (33081912-33081621) | |
| 453-646, gnl|echTel1|scaffold_297505 (92039-92319) | |
| 453-646, gnl|hg17|chr8 (27418381-27418673) | |
| 453-646, gnl|Hg17|chr8 (27418389-27418582) | |
| 453-646, gnl|loxAfr1|scaffold_5362 (57286-57573) | |
| 453-646, gnl|mm7|chr14 (60968642-60968360) | |
| 453-646, gnl|Mm7|chr14 (60968632-60968439) | |
| 453-646, gnl|monDom2|scaffold_1 (153228838-153229113) | |
| 453-646, gnl|oryCun1|scaffold_176524 (36331-36615) | |
| 453-646, gnl|panTro1|chr7 (28390416-28390708) | |
| 453-646, gnl|rheMac2|chr8 (27659058-27659350) | |
| 453-646, gnl|rn3|chr15 (45558594-45558304) | |
| 1164-1276, gnl|bosTau2|chr5 (33918232-33918120) | |
| 1164-1276, gnl|canFam2|chr25 (33057887-33057712) | |
| 1164-1276, gnl|dasNov1|scaffold_163460 (4030-4193) | |
| 1164-1276, gnl|echTel1|scaffold_297505 (110072-110248) | |
| 1164-1276, gnl|hg17|chr8 (27438688-27438870) | |
| 1164-1276, gnl|Hg17|chr8 (27438794-27438906) | |
| 1164-1276, gnl|loxAfr1|scaffold_49794 (4080-4278) | |
| 1164-1276, gnl|mm7|chr14 (60953477-60953302) | |
| 1164-1276, gnl|Mm7|chr14 (60953376-60953264) | |
| 1164-1276, gnl|oryCun1|scaffold_159888 (754-911) | |
| 1164-1276, gnl|panTro1|chr7 (28410830-28411012) | |
| 1164-1276, gnl|rheMac2|chr8 (27679108-27679290) | |
| 1383-1487, gnl|bosTau2|chr5 (33906131-33906027) | |
| 1383-1487, gnl|canFam2|chr25 (33040851-33040587) | |
| 1383-1487, gnl|dasNov1|scaffold_23909 (12180-11927) | |
| 1383-1487, gnl|echTel1|scaffold_304884 (746-1017) | |
| 1383-1487, gnl|hg17|chr8 (27453970-27454247) | |
| 1383-1487, gnl|Hg17|chr8 (27453987-27454091) | |
| 1383-1487, gnl|loxAfr1|scaffold_72813 (8975-8705) | |
| 1383-1487, gnl|mm7|chr14 (60947542-60947297) | |
| 1383-1487, gnl|Mm7|chr14 (60947532-60947428) | |
| 1383-1487, gnl|oryCun1|scaffold_159888 (9293-9568) | |
| 1383-1487, gnl|panTro1|chr7 (28426178-28426455) | |
| 1383-1487, gnl|rheMac2|chr8 (27694815-27695092) | |
| 1383-1487, gnl|rn3|chr15 (45515553-45515299) | |
| 1694-2163, gnl|bosTau2|chr5 (33899103-33898632) | |
| 1694-2163, gnl|Hg17|chr8 (27457875-27458348) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| cki (0.826173) | |
| hea (0.613497) | |
| cte (0.58548) | |
| fbs (0.526039) | |
| sin (0.524843) | |
| fhi (0.508733) | |
| lun (0.451467) | |
| cmu (0.372787) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| cut (0.339847) | |
| cje (0.330469) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| tra (0.246184) | |
| pan (0.23596) | |
| fli (0.202881) | |
| col (0.195008) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| duo (0.172801) | |
| nje (0.16592) | |
| fco (0.157208) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| med (0.116252) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.826173) | |
| hea (0.613497) | |
| cte (0.58548) | |
| fbs (0.526039) | |
| sin (0.524843) | |
| fhi (0.508733) | |
| lun (0.451467) | |
| cmu (0.372787) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| cut (0.339847) | |
| cje (0.330469) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| tra (0.246184) | |
| pan (0.23596) | |
| fli (0.202881) | |
| col (0.195008) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| duo (0.172801) | |
| nje (0.16592) | |
| fco (0.157208) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| med (0.116252) |