Ss1.1-rspc013_k5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGCAACCACTGTCCTACAGGAGCTTAAGAAACTTCCACCTCTTCCTGTGGTTGAAAA GCCAAAACTATTTTTTAAAAAACGCCCTAAAACAATAGTAAAGGCTGGACCAGAATATGG TCAAGGAATGAACCCCATTAGCCGCCTGGCTCAAATTCAACAGGCCAAAAAGGAAAAAGA GCCAGATTATGTTTTGCTTTCGGAAAGAGGAATGCCTCGACGTCGGGAATTTGTGATGCA GGTCAAGGTAGGCAATGAAGTTGCTACTGGAACAGGACCTAATAAAAAGATAGCCAAAAA GAATGCTGCGGAAGCAATGCTGTTACAACTTGGTTATAAAGCATCCACTAATCTTCAGGA TCAGCTTGACAAGACAGGGGAAAACAAAGGATGGAGTGGTCCGAAGGCTGGGTTTCCTGA ACCAACAAATAACACTCCAAAAGGAATTCTTCATTTGTCTCCTGATGTTTATCAAGAGAT GGAAGCCAGCCGCCACAAAGTAATCTCTGGCACTACTCTAGGCTATTTGTCACCCAAAGA TATGAACCAGCCCTCAAGCTCTTTCTTCAGTGTATCTCCCACATCGAATAGTTCAGCTAC CATTGCCAGGGAACTCCTTATGAATGGAACGTCTCCTACAGCTGAAGCCATAGGTTTAAA AGGAAGTTCTCCTACTCCCCCTTGTTCTCCAGTACAGCCTTCAAAACAACTGGAATATTT AGCAAGGATTCAAGGCTTTCAGGCAGCTTTAAGTGCCTTGAAACAATTTTCTGAACAAGG ATTGGATCCGATGGAAGGGGCAATGAATATTGAAAAAGGTTCTCTTGAAAAACAAGCCCA GCATCTGGGGGAGAAAGCGGACAATAACCAGACACACCCGGGCTCCATCGCTCAGGACTG CAAGAAATCAAGGTCGGTCATCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGCAACCACTGTCCTACAGGAGCTTAAGAAACTTCCACCTCTTCCTGTGGTTGAAAA GCCAAAACTATTTTTTAAAAAACGCCCTAAAACAATAGTAAAGGCTGGACCAGAATATGG TCAAGGAATGAACCCCATTAGCCGCCTGGCTCAAATTCAACAGGCCAAAAAGGAAAAAGA GCCAGATTATGTTTTGCTTTCGGAAAGAGGAATGCCTCGACGTCGGGAATTTGTGATGCA GGTCAAGGTAGGCAATGAAGTTGCTACTGGAACAGGACCTAATAAAAAGATAGCCAAAAA GAATGCTGCGGAAGCAATGCTGTTACAACTTGGTTATAAAGCATCCACTAATCTTCAGGA TCAGCTTGACAAGACAGGGGAAAACAAAGGATGGAGTGGTCCGAAGGCTGGGTTTCCTGA ACCAACAAATAACACTCCAAAAGGAATTCTTCATTTGTCTCCTGATGTTTATCAAGAGAT GGAAGCCAGCCGCCACAAAGTAATCTCTGGCACTACTCTAGGCTATTTGTCACCCAAAGA TATGAACCAGCCCTCAAGCTCTTTCTTCAGTGTATCTCCCACATCGAATAGTTCAGCTAC CATTGCCAGGGAACTCCTTATGAATGGAACGTCTCCTACAGCTGAAGCCATAGGTTTAAA AGGAAGTTCTCCTACTCCCCCTTGTTCTCCAGTACAGCCTTCAAAACAACTGGAATATTT AGCAAGGATTCAAGGCTTTCAGGCAGCTTTAAGTGCCTTGAAACAATTTTCTGAACAAGG ATTGGATCCGATGGAAGGGGCAATGAATATTGAAAAAGGTTCTCTTGAAAAACAAGCCCA GCATCTGGGGGAGAAAGCGGACAATAACCAGACACACCCGGGCTCCATCGCTCAGGACTG CAAGAAATCAAGGTCGGTCATCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 435-553, - strand, RNAz p=0.978024 | |
| 435-553, - strand, RNAz p=0.958349 | |
| 626-743, - strand, RNAz p=0.60357 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 435-553, - strand, RNAz p=0.978024 | |
| 435-553, - strand, RNAz p=0.958349 | |
| 626-743, - strand, RNAz p=0.60357 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 102-243, gnl|bosTau2|chr14 (21010612-21010753) | |
| 102-243, gnl|canFam2|chr29 (25163844-25164035) | |
| 102-243, gnl|canFam2|chr29 (25163849-25163983) | |
| 102-243, gnl|danRer3|chr24 (17196524-17196696) | |
| 102-243, gnl|danRer3|chr24 (17196524-17196648) | |
| 102-243, gnl|dasNov1|scaffold_12297 (7395-7586) | |
| 102-243, gnl|dasNov1|scaffold_12297 (7399-7535) | |
| 102-243, gnl|echTel1|scaffold_102235 (7602-7471) | |
| 102-243, gnl|echTel1|scaffold_321149 (48458-48268) | |
| 102-243, gnl|fr1|chrUn (265254934-265254758) | |
| 102-243, gnl|fr1|chrUn (44811243-44811111) | |
| 102-243, gnl|galGal2|chr2 (117396155-117396340) | |
| 102-243, gnl|galGal2|chr2 (117396159-117396294) | |
| 102-243, gnl|hg17|chr8 (74678513-74678704) | |
| 102-243, gnl|Hg17|chr8 (74678654-74678513) | |
| 102-243, gnl|hg17|chrX (89100865-89101003) | |
| 102-243, gnl|loxAfr1|scaffold_31201 (17238-17053) | |
| 102-243, gnl|loxAfr1|scaffold_583 (26081-26222) | |
| 102-243, gnl|mm7|chr1 (16562774-16562957) | |
| 102-243, gnl|Mm7|chr1 (16562915-16562774) | |
| 102-243, gnl|mm7|chr2 (166693860-166693985) | |
| 102-243, gnl|monDom2|scaffold_22 (19934148-19934015) | |
| 102-243, gnl|monDom2|scaffold_4 (86907930-86907743) | |
| 102-243, gnl|oryCun1|scaffold_157186 (2834-3025) | |
| 102-243, gnl|oryCun1|scaffold_189215 (4804-4947) | |
| 102-243, gnl|panTro1|chr7 (76716285-76716476) | |
| 102-243, gnl|panTro1|chrX (91848122-91848260) | |
| 102-243, gnl|rheMac2|chr8 (76112001-76112192) | |
| 102-243, gnl|rheMac2|chr8 (76112005-76112140) | |
| 102-243, gnl|rn3|chr3 (158012547-158012688) | |
| 102-243, gnl|rn3|chr3 (158012546-158012685) | |
| 102-243, gnl|tetNig1|chr6 (1946001-1945823) | |
| 102-243, gnl|tetNig1|chr6 (1946001-1945862) | |
| 102-243, gnl|xenTro1|scaffold_245 (1199433-1199595) | |
| 102-243, gnl|xenTro1|scaffold_245 (1207466-1207590) | |
| 435-743, gnl|bosTau2|chr14 (21061641-21061949) | |
| 435-743, gnl|canFam2|chr29 (25109372-25109575) | |
| 435-743, gnl|danRer3|chr24 (17154168-17154368) | |
| 435-743, gnl|echTel1|scaffold_255531 (9382-9585) | |
| 435-743, gnl|fr1|chrUn (303704888-303704655) | |
| 435-743, gnl|galGal2|chr2 (117375263-117375465) | |
| 435-743, gnl|Hg17|chr8 (74627108-74626800) | |
| 435-743, gnl|hg17|chrX (89100356-89100559) | |
| 435-743, gnl|loxAfr1|scaffold_26593 (13234-13031) | |
| 435-743, gnl|mm7|chr1 (16533800-16534003) | |
| 435-743, gnl|Mm7|chr1 (16534113-16533805) | |
| 435-743, gnl|monDom2|scaffold_4 (86973402-86973200) | |
| 435-743, gnl|oryCun1|scaffold_189215 (4319-4515) | |
| 435-743, gnl|panTro1|chrX (91847613-91847816) | |
| 435-743, gnl|rheMac2|chrX (88734842-88735044) | |
| 435-743, gnl|rn3|chr5 (2084649-2084443) | |
| 435-743, gnl|tetNig1|chr6 (1955160-1954927) | |
| 435-743, gnl|xenTro1|scaffold_245 (1186065-1186268) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-243, gnl|bosTau2|chr14 (21010612-21010753) | |
| 102-243, gnl|canFam2|chr29 (25163844-25164035) | |
| 102-243, gnl|canFam2|chr29 (25163849-25163983) | |
| 102-243, gnl|danRer3|chr24 (17196524-17196696) | |
| 102-243, gnl|danRer3|chr24 (17196524-17196648) | |
| 102-243, gnl|dasNov1|scaffold_12297 (7395-7586) | |
| 102-243, gnl|dasNov1|scaffold_12297 (7399-7535) | |
| 102-243, gnl|echTel1|scaffold_102235 (7602-7471) | |
| 102-243, gnl|echTel1|scaffold_321149 (48458-48268) | |
| 102-243, gnl|fr1|chrUn (265254934-265254758) | |
| 102-243, gnl|fr1|chrUn (44811243-44811111) | |
| 102-243, gnl|galGal2|chr2 (117396155-117396340) | |
| 102-243, gnl|galGal2|chr2 (117396159-117396294) | |
| 102-243, gnl|hg17|chr8 (74678513-74678704) | |
| 102-243, gnl|Hg17|chr8 (74678654-74678513) | |
| 102-243, gnl|hg17|chrX (89100865-89101003) | |
| 102-243, gnl|loxAfr1|scaffold_31201 (17238-17053) | |
| 102-243, gnl|loxAfr1|scaffold_583 (26081-26222) | |
| 102-243, gnl|mm7|chr1 (16562774-16562957) | |
| 102-243, gnl|Mm7|chr1 (16562915-16562774) | |
| 102-243, gnl|mm7|chr2 (166693860-166693985) | |
| 102-243, gnl|monDom2|scaffold_22 (19934148-19934015) | |
| 102-243, gnl|monDom2|scaffold_4 (86907930-86907743) | |
| 102-243, gnl|oryCun1|scaffold_157186 (2834-3025) | |
| 102-243, gnl|oryCun1|scaffold_189215 (4804-4947) | |
| 102-243, gnl|panTro1|chr7 (76716285-76716476) | |
| 102-243, gnl|panTro1|chrX (91848122-91848260) | |
| 102-243, gnl|rheMac2|chr8 (76112001-76112192) | |
| 102-243, gnl|rheMac2|chr8 (76112005-76112140) | |
| 102-243, gnl|rn3|chr3 (158012547-158012688) | |
| 102-243, gnl|rn3|chr3 (158012546-158012685) | |
| 102-243, gnl|tetNig1|chr6 (1946001-1945823) | |
| 102-243, gnl|tetNig1|chr6 (1946001-1945862) | |
| 102-243, gnl|xenTro1|scaffold_245 (1199433-1199595) | |
| 102-243, gnl|xenTro1|scaffold_245 (1207466-1207590) | |
| 435-743, gnl|bosTau2|chr14 (21061641-21061949) | |
| 435-743, gnl|canFam2|chr29 (25109372-25109575) | |
| 435-743, gnl|danRer3|chr24 (17154168-17154368) | |
| 435-743, gnl|echTel1|scaffold_255531 (9382-9585) | |
| 435-743, gnl|fr1|chrUn (303704888-303704655) | |
| 435-743, gnl|galGal2|chr2 (117375263-117375465) | |
| 435-743, gnl|Hg17|chr8 (74627108-74626800) | |
| 435-743, gnl|hg17|chrX (89100356-89100559) | |
| 435-743, gnl|loxAfr1|scaffold_26593 (13234-13031) | |
| 435-743, gnl|mm7|chr1 (16533800-16534003) | |
| 435-743, gnl|Mm7|chr1 (16534113-16533805) | |
| 435-743, gnl|monDom2|scaffold_4 (86973402-86973200) | |
| 435-743, gnl|oryCun1|scaffold_189215 (4319-4515) | |
| 435-743, gnl|panTro1|chrX (91847613-91847816) | |
| 435-743, gnl|rheMac2|chrX (88734842-88735044) | |
| 435-743, gnl|rn3|chr5 (2084649-2084443) | |
| 435-743, gnl|tetNig1|chr6 (1955160-1954927) | |
| 435-743, gnl|xenTro1|scaffold_245 (1186065-1186268) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| spc (0.113366) | |
| eje (0.0988338) |