Non-Coding RNA Search

Ss1.1-rspc013_m1.5

Sequence:


               
               GTCTGTTACCATAGGAAAACTACTTCCTATTTGGGCAGGAAGTCAATCTGTGTAACAATT
AGAGACAGCATTTCATATGATCTGATGTTCTAAATGGTTCTCCGATTTGAGGGAGGTTAA
ATTGAATAGGTTTCCTCTAGATATTGGCCATAACATGTATAAAATGTATATTAAGGAGGA
ATTACAAAGCACTTTGATTTCAATGCTAGTAGAAACTGGCCAGCAAAAAAAGGTGCATTT
AAAAAAAATGGATCACTTGGGAATTACTGACTTGAAGTATCAAAGGATATTTGCATGTGA
ATGTGGGTTATGTTCTTCTTTCTCATCTTGTAGCATATTCTATGAAAGTTAAGTTGACTG
GTAGCTAAAAATCTGTTTTAACAGCATGTAAAAAGTTACTTTATCTGTTACAAGTCATTA
TACAATTTTGAATGTTCTGTAGTTTCTTTTTAACAGTTTAGGTAATAAGGTCTGTTTTTC
ATTCTGGTGCTTTTATTAATTTTGATAGTATGATGTTACTTCCTACTGAAATGTAAGCTT
AGAGTGTACACTAGAATGTAAGCTCCATGAGAGCAGGTACCTTGTCTGTCTTCACTGCTG
TATCTATTTCCAACGCCTGATGACAGTGCCTGGCACATAGTAGGCACTCAATAAATATTT
GTTGAATGAATGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGTTACCATAGGAAAACTACTTCCTATTTGGGCAGGAAGTCAATCTGTGTAACAATT
AGAGACAGCATTTCATATGATCTGATGTTCTAAATGGTTCTCCGATTTGAGGGAGGTTAA
ATTGAATAGGTTTCCTCTAGATATTGGCCATAACATGTATAAAATGTATATTAAGGAGGA
ATTACAAAGCACTTTGATTTCAATGCTAGTAGAAACTGGCCAGCAAAAAAAGGTGCATTT
AAAAAAAATGGATCACTTGGGAATTACTGACTTGAAGTATCAAAGGATATTTGCATGTGA
ATGTGGGTTATGTTCTTCTTTCTCATCTTGTAGCATATTCTATGAAAGTTAAGTTGACTG
GTAGCTAAAAATCTGTTTTAACAGCATGTAAAAAGTTACTTTATCTGTTACAAGTCATTA
TACAATTTTGAATGTTCTGTAGTTTCTTTTTAACAGTTTAGGTAATAAGGTCTGTTTTTC
ATTCTGGTGCTTTTATTAATTTTGATAGTATGATGTTACTTCCTACTGAAATGTAAGCTT
AGAGTGTACACTAGAATGTAAGCTCCATGAGAGCAGGTACCTTGTCTGTCTTCACTGCTG
TATCTATTTCCAACGCCTGATGACAGTGCCTGGCACATAGTAGGCACTCAATAAATATTT
GTTGAATGAATGAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-674, gnl|bosTau2|chr15 (39040616-39041282)
               

               
               1-674, gnl|Hg17|chr11 (34076510-34077183)
               

               
               1-674, gnl|Mm7|chr2 (103618574-103617894)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-674, gnl|bosTau2|chr15 (39040616-39041282)
               

               
               1-674, gnl|Hg17|chr11 (34076510-34077183)
               

               
               1-674, gnl|Mm7|chr2 (103618574-103617894)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	1-674, gnl\|bosTau2\|chr15 (39040616-39041282)
	1-674, gnl\|Hg17\|chr11 (34076510-34077183)
	1-674, gnl\|Mm7\|chr2 (103618574-103617894)

	fco (0.314416)
	cbe (0.239234)
	aor (0.195274)
	lin (0.145603)
	pty (0.142714)
	ova (0.129132)
	sug (0.127291)
	spc (0.113366)